Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7343 399 2e-106 >seq7343 Length=933009 Score = 399 bits (442), Expect = 2e-106 Identities = 622/887 (70%), Gaps = 4/887 (0%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| | ||| ||||||||| || ||||||||| || || || ||||| ||| Sbjct 375285 AACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGT 375226 Query 4307 CGAAATATTTTC--CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT 4364 || |||| || ||||||||| ||||||||||| | || ||| |||||||| Sbjct 375225 AGA--TATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCG 375168 Query 4365 AGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTA 4424 || | | |||| ||||||||| ||||||||||| ||||||| |||||| | |||||| Sbjct 375167 AGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTC 375108 Query 4425 ATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 || || || | || ||||| || || | | || |||||| ||||| ||| || || Sbjct 375107 ATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCA 375048 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAAT 4544 ||| || || | | | | | ||||| || ||||| | || | || || | | Sbjct 375047 TCTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATAGT 374988 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||||| ||||||||||| |||||||||||| |||||||| || ||||| || Sbjct 374987 AAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTC 374928 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | |||||||| || || | || |||||||| || || | ||||| ||||| || Sbjct 374927 AGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAA 374868 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 ||||| ||||| || || || || || || | || || || | | | ||| Sbjct 374867 AATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAG 374808 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||| || | ||||||| ||||| || | || || |||| ||| | || ||| Sbjct 374807 CTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGCG 374748 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 ||||| || |||||| | || || || || || || || || || | ||| ||| Sbjct 374747 TTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTAC 374688 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 |||||||| || |||||||| || || || ||||| || || || |||||||| || ||| Sbjct 374687 ATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGGTT 374628 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 ||||| ||||| | | |||| ||| || | |||||||| || || || ||| ||| Sbjct 374627 ACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGCT 374568 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 || ||||| |||| ||||| ||||| |||| | ||| | | || || ||||| Sbjct 374567 GCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCCAA 374508 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 || | |||| || || || |||||||| ||||||||||| ||||||||||| Sbjct 374507 TGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTTTC 374448 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||||| | ||| || || ||||| ||||| || | |||||||| Sbjct 374447 TTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427006984186604