Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4314 109 4e-19 seq5491 96.9 3e-15 seq4315 96.9 3e-15 >seq4314 Length=7604 Score = 109 bits (120), Expect = 4e-19 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 27213 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 27272 ||||| || || |||||||| ||||| || | ||||||||| |||||||| |||||||| Sbjct 1791 GGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCC 1850 Query 27273 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTA 27332 |||||||| ||| | || || || || | || ||||| || || |||| ||||| Sbjct 1851 CAGCCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTA 1910 Query 27333 AAACTGACATATGGC-GTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGTT 27389 |||||| || | | | || || || || | ||||| | ||| | |||| ||||| Sbjct 1911 AAACTG-CACAAGACAATGACAGGGGGGCAAAGCCATTTCAGG--AATGTCTACCGGGTT 1967 Query 27390 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 ||| ||||||| || || | || ||| || ||||| ||||| Sbjct 1968 CCAAGCGCACATAATCATCCTTCTATCTGTGGGTTTGTTTCTGAT 2012 >seq5491 Length=7586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/225 (71%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 27213 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 27272 ||||| || || |||||||| ||||| || | ||||||||| |||||||| |||||||| Sbjct 5796 GGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCC 5737 Query 27273 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTA 27332 |||||||| || || || || || | || ||||| || || |||| ||||| Sbjct 5736 CAGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTA 5677 Query 27333 AAACTGACATATGGC-GTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGTT 27389 |||||| || | ||| || || || | | ||||| | ||| | ||| | ||||| Sbjct 5676 AAACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGG--AATGTC-TCCGGGTT 5621 Query 27390 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 ||| ||||||| || || | || ||| || ||||| ||||| Sbjct 5620 CCAAGCGCACATAATCATCCTTCTATCTGTGGGTTTGTTTCTGAT 5576 >seq4315 Length=6298 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/225 (71%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 27213 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 27272 ||||| || || |||||||| ||||| || | ||||||||| |||||||| |||||||| Sbjct 2428 GGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCC 2369 Query 27273 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTA 27332 |||||||| || || || || || | || ||||| || || |||| ||||| Sbjct 2368 CAGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTA 2309 Query 27333 AAACTGACATATGGC-GTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGTT 27389 |||||| || | ||| || || || | | ||||| | ||| | ||| | ||||| Sbjct 2308 AAACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGG--AATGTC-TCCGGGTT 2253 Query 27390 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 ||| ||||||| || || | || ||| || ||||| ||||| Sbjct 2252 CCAAGCGCACATAATCATCCTTCTATCTGTGGGTTTGTTTCTGAT 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369470326414628