Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq2768 190 2e-43 >seq2768 Length=8677 Score = 190 bits (210), Expect = 2e-43 Identities = 451/672 (67%), Gaps = 12/672 (2%) Strand=Plus/Minus Query 142071 TTTAAAGTCATCTGTGGTAACCCATGTCTCAACATCTTCCAGAGACTTGATGTTAGGGTT 142130 || |||||||||| || |||||||| |||| |||||| || | || || | |||||| Sbjct 1910 TTCAAAGTCATCTAATGTCACCCATGTTTCAATATCTTCAAGCGTTTTAATTTCAGGGTT 1851 Query 142131 AATAATTAGTTGAGGCTCGTCAAAGGGCTCACGGGAGATCTGTGTCGGCAC-CATAGGT- 142188 ||| |||| ||| | | | || ||||| | ||| | ||| ||| || Sbjct 1850 GATATGGAGTTTTGGCGCAGGATAAGGTTCACGTTTAAGCTGAA-CATCACGCATGAGTT 1792 Query 142189 --AATTGGTCTTCATAGATATGTGCGTTCACAATCTTAT-AGAACATTTTACCTGGCTTG 142245 || || || ||||| ||||| || ||||||||||| | | || ||| || | ||| Sbjct 1791 CTAACTGATCCTCATAAATATGCGCATTCACAATCTTGTGATAAGCCTTT-CCAGCCTTA 1733 Query 142246 TTCCGGGTGATTTGAGCCATCAGATGCAGGAATGTATACGCCTGGATTAAATCAAAGTTC 142305 | | || ||||||||||||||| | | ||| | |||| ||| | ||| || Sbjct 1732 TGTCCTGTAATTTGAGCCATCAGAGCTAACAGAGTAAAAACCTGAATTTGGTTAAAATTT 1673 Query 142306 AATCCTAATGGAACATCCGCCGAACGTTGATAAACGGTCACATGCAAAGTATCATGTACT 142365 || || || ||||| ||||||||| | || | | | ||||| ||| Sbjct 1672 TGGCCCAAAGGTACATCACACGAACGTTGTGATGATGTTAAGTAAAGTGTATCCCCTACC 1613 Query 142366 AAAGAAAAAGTATATGTGTGTACGCATGAACGTAAACATCCTAATTCAATTTCACCAGGG 142425 ||||| || |||| || || | || | |||| || || | |||| || || ||| Sbjct 1612 AAAGAGAAGGTATGAGTATGCATACAAGGTCGTAGGCAACCCATATCAAACTCCCCTGGG 1553 Query 142426 TTCCAGTAAGAAAGAATTTCACCACGATCGTCGATACCCGCTGACAGGTTTTCATAGATT 142485 || || ||| ||||||||||||||||| || ||||| | | || |||||||| Sbjct 1552 TTATAGAAAGTCAGAATTTCACCACGATCATCAATACCTTTTCGTAAGTCATCATAGATC 1493 Query 142486 TTACGAAGTTGATCGA---CTTCACCATTAGGACCAACCCAATGTCTGCCCTGTACACCA 142542 |||||||| || || | ||| ||| | || | |||||| | || || || || Sbjct 1492 TTACGAAGCTGGTCAAACTCTTTACCTTCAGAGTTACGCCAATGGCGCCCTTGGACTCCG 1433 Query 142543 TAAACCCGGCCCATATCGTCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCATTC 142602 || || || |||||||| |||||||||||||||| ||||| |||||| ||| |||| Sbjct 1432 TATACTCGCCCCATATCATCTTCACCTTTACGATAAGGGTTAGCTAACCAAGCTCCATTT 1373 Query 142603 TCATTGGCATTAGCATTCCAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGCAGACGAC 142662 || || ||||| |||||||||||||| |||| || ||||| | || ||| | | Sbjct 1372 TCGTTAGCATTTGCATTCCAAGTATTACAGCCAATGGCTCGGAACTGAGCAGCA-TTGTC 1314 Query 142663 AGA-CCACGAATATAACCCAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACGAGT 142721 | | ||||| | || || | || || ||||| | ||| || | ||||||| || || Sbjct 1313 ATATCCACGCAAGTAGCCTAATAGCTCAGCAATAGCTGCCTTCCAGTAACTTTTTCGGGT 1254 Query 142722 GGTGTCTAATGG 142733 || |||| || Sbjct 1253 CGTAACTAAGGG 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522061761509280