Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7343 289 4e-73 seq7149 136 5e-27 seq7443 84.2 3e-11 >seq7343 Length=933009 Score = 289 bits (320), Expect = 4e-73 Identities = 609/895 (68%), Gaps = 21/895 (2%) Strand=Plus/Minus Query 47839 TAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 47898 |||| || | ||| || ||||| || || || |||||||| || || ||||| || Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTC-- 375229 Query 47899 ATG-ATATATTTTC--CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATC 47955 || | ||||| || ||||||||| || |||||| ||||||||| |||| | | | Sbjct 375228 -TGTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAAC 375170 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAAT 48015 | | ||| | ||||| || || || |||||||| || ||| | | || | Sbjct 375169 CGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGT 375110 Query 48016 TCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAG 48075 |||| || ||||| |||| || || || |||| |||||||| ||||||||| || | Sbjct 375109 TCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTG 375050 Query 48076 CATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATAC---AACAA-ATGTTTA 48131 |||| || || || || |||| | ||| || | ||| | || Sbjct 375049 CATCTCGAATAATGCCCGTCACTCTTTCTT----TGGAGGGTTTTTGAACGAGATAGGAG 374994 Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 || | |||||| ||||| |||||||| | ||||| ||||| || | ||| || ||| Sbjct 374993 AATAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAA 374934 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CC 48250 ||||| || |||||||| | || ||||| || ||||| || || | || |||| | || Sbjct 374933 AATGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGC-AAAGCTGCC 374875 Query 48251 AGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CTT 48309 ||| || ||||| ||||| || || || || ||| | ||||||||| | ||| | | Sbjct 374874 AGAGAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGT 374815 Query 48310 CGTTGTGT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 | | | | |||||| | ||||| || || ||| || ||||||| || | |||||| Sbjct 374814 CTTGGAGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTC 374755 Query 48368 TATAGCATTAAAGA-GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAA 48426 || || ||||| | |||| |||| | | | ||| | | ||| || || || | | Sbjct 374754 AATTGCGTTAAACAAGAAACTTTTCTGAACAGG-ATCGCTGATGTAGGTCTCAATCAGCA 374696 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 || |||||||| |||||||||||||| || || || ||||| || || |||||||| | Sbjct 374695 TGCTGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAG 374636 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 | || || | || || ||| | |||||||| | | ||| || || || || |||| Sbjct 374635 CCTCGGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCAT 374576 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606 || || || ||||| || | ||||| || || | |||| ||| ||||| | Sbjct 374575 CAGATGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCT 374516 Query 48607 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 ||||||| | || || |||| |||| || |||||||| | |||||||| || || | Sbjct 374515 TATTCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTT 374456 Query 48667 CTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||||| || ||| | | ||| || || ||||| || ||||| || ||||| Sbjct 374455 CCGCTTTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 136 bits (150), Expect = 5e-27 Identities = 380/580 (66%), Gaps = 5/580 (1%) Strand=Plus/Minus Query 76772 CTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACC 76831 |||||| | || ||||| || ||| | || || || || | | ||| ||||| || Sbjct 124036 CTTATCGACGGTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCC 123977 Query 76832 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGG 76891 ||||| || ||| |||| ||||| || ||||| | ||| | || || | Sbjct 123976 GGTTTTCAGGCCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGC 123917 Query 76892 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 | | || || || |||| || ||||| ||||| || || || | ||| || || Sbjct 123916 TTTTTCAATGTGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGC 123857 Query 76952 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 77011 ||| | | ||| ||||| | ||||||||| | || ||| | | | || | || Sbjct 123856 CATATCGAGGATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTC 123797 Query 77012 ATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTAT 77068 ||| || | || | | ||||| || || || || | ||| | | ||||| || Sbjct 123796 ATCAGGGATGTCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCAT 123737 Query 77069 ATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTG 77128 || | ||||| | || || || || | | || ||||| |||| || | ||| Sbjct 123736 CGTGTCGTCCCACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACTTG 123677 Query 77129 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 77188 ||| || || |||| ||||| ||||||||||| ||||| || || || || || ||| Sbjct 123676 AAACTCCCCGGACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTC 123617 Query 77189 ATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA-T 77247 || ||||||| ||||| || || ||||| || ||||| || |||| || ||| | | Sbjct 123616 GTTATTTCCCAGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA-GAAGCAACGAGT 123558 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307 |||| | |||||| | |||||| | |||| ||||||||| ||||||| | Sbjct 123557 TTCTTACGCCATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCACAGATCTGTGG 123498 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACT 77347 | | |||||||| | ||||| || || ||||| | ||| Sbjct 123497 GCATGACATCCCACATGTCGTACTGGAGGATTCCTTGACT 123458 Score = 96.9 bits (106), Expect = 5e-15 Identities = 200/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 78391 |||||| ||||| || |||||||| ||| | || || || ||| || | |||| | Sbjct 122240 GTAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAGG 122181 Query 78392 A-TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAA 78450 || | || | || || || | || ||| || ||||| || | || || || | Sbjct 122180 TCTGGGC-GTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACA 122122 Query 78451 GTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACAC 78510 | ||||| ||||| || ||||| || || || | ||| || || || | || | Sbjct 122121 TGAAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCC 122062 Query 78511 GCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATT 78570 ||||||||| ||||| || |||||||| |||| || || |||| | || || Sbjct 122061 TCATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATACGACC 122002 Query 78571 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | |||| ||||| || ||||| |||||||| || || |||| ||||||||||| Sbjct 122001 TCTCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAAATAAT 121947 >seq7443 Length=177603 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 171495 TAGAAGGTTTGGTTTTAAAGGATATTAATG-GTATGTACGAGCCCGGAAAACGTAGATGG 171553 |||| |||||||||||||| || | |||| |||| ||||| ||||||||||| ||| Sbjct 17013 TAGAGGGTTTGGTTTTAAAAGACAC-AATGAGTATTTACGAACCCGGAAAACGCCTTTGG 16955 Query 171554 CTTAAAATAAAGAGAGACTACTTGAACGAGGGTTCGATGGCGGATTCTGCAGATCTAGTA 171613 || ||| | || | ||| || ||| || || | |||||||| ||| ||| | || Sbjct 16954 CTCAAAGTGAAAAAAGATTATTTGTTTGATGGAGCCATGGCGGACAGTGCGGATTTGATA 16895 Query 171614 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTCTTTTTGATG 171673 || | || || | || || | ||| ||| || || |||||| | || ||| | ||| Sbjct 16894 GTGCTAGGTGCTTGGTACGGTAGTGGACAAAAAGGAGGTATGATGTCTGTGTTTCTCATG 16835 Query 171674 GGCTGTTA 171681 || ||||| Sbjct 16834 GGATGTTA 16827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694597700648320