Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7343 320 2e-82 seq7149 161 1e-34 seq7443 86.0 9e-12 >seq7343 Length=933009 Score = 320 bits (354), Expect = 2e-82 Identities = 614/892 (69%), Gaps = 15/892 (2%) Strand=Plus/Minus Query 46328 TAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 46387 |||| || | ||| |||||||| || || || |||||||| || || ||||| || Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTC-- 375229 Query 46388 ATG-ATATATTTTC--CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATC 46444 || | ||||| || ||||||||| ||||||||||| |||||||||| |||| | | | Sbjct 375228 -TGTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAAC 375170 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAAT 46504 | | ||| | ||||| || || || |||||||| ||| ||| | | || | Sbjct 375169 CGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGT 375110 Query 46505 TCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAG 46564 |||| || || || | || || || || |||| |||||||| ||||| ||| || | Sbjct 375109 TCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTG 375050 Query 46565 CATC-CGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAAC 46623 |||| ||| || || || ||| |||| | ||| || | | || || Sbjct 375049 CATCTCGA-ATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAAT 374991 Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 | |||||| ||||| |||||||| | ||||| ||||| || | ||| || |||||| Sbjct 374990 AGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAAT 374931 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGA 46742 || || || ||||| | || || || || ||||| || || | || |||| | ||||| Sbjct 374930 GTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGC-AAAGCTGCCAGA 374872 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG-CATCAT 46801 || ||||| ||||| ||||| ||||| ||||| | ||||||||| | ||| | || | Sbjct 374871 GAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTT 374812 Query 46802 TATG--AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTAT 46859 | |||||| | | ||||| || || || || ||||||| || | |||||| || Sbjct 374811 GGAGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAAT 374752 Query 46860 AGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACT 46919 || ||||| | || |||| | | || ||| | | || || || || | | || Sbjct 374751 TGCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCT 374692 Query 46920 ATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 |||||||| || ||||| ||||| || || || ||||| || || |||||||| || || Sbjct 374691 GTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTC 374632 Query 46980 AGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCAC 47038 || | || || || | |||||||| |||| ||| || ||||| || |||||| Sbjct 374631 GGTTACTTGCACTTCCTGGCTGAATCGTTC-CACAAGATTTTCGTTCACAATGCCATCAG 374573 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT 47098 || || ||||| |||| ||||| || || | |||||| | | ||||| |||| Sbjct 374572 ATGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTAT 374513 Query 47099 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTG 47158 |||| | || || |||| |||| || |||||||| | ||||| || || || || | Sbjct 374512 TCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCG 374453 Query 47159 CTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 |||| || ||| | | ||| || || ||||||| || || || || ||||| Sbjct 374452 CTTTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 161 bits (178), Expect = 1e-34 Identities = 382/574 (67%), Gaps = 5/574 (1%) Strand=Plus/Minus Query 75367 CTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACC 75426 |||||| | |||||||| |||||| || || || || || | | ||| ||||| || Sbjct 124036 CTTATCGACGGTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCC 123977 Query 75427 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGG 75486 ||||| || ||| |||| ||||| || ||||| | || | || || | Sbjct 123976 GGTTTTCAGGCCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGC 123917 Query 75487 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 75546 | | || || || |||| || ||||| ||||| || || || | ||| || || Sbjct 123916 TTTTTCAATGTGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGC 123857 Query 75547 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606 ||| | | ||| ||||| | ||||||||| | || ||| | | | || | || Sbjct 123856 CATATCGAGGATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTC 123797 Query 75607 ATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGAT 75663 ||| || | | | | ||||| || || ||| || | ||| | | ||||| || Sbjct 123796 ATCAGGGATGTCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCAT 123737 Query 75664 CTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTG 75723 | || | ||||| | ||| ||||| || | | || ||||| |||| || | ||| Sbjct 123736 CGTGTCGTCCCACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACTTG 123677 Query 75724 AAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 75783 ||| || || |||| ||||| ||||||||||| ||||| || || || || || ||| Sbjct 123676 AAACTCCCCGGACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTC 123617 Query 75784 ATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA-T 75842 || ||||||| ||||| || |||||||| || ||||| || |||| || ||| | | Sbjct 123616 GTTATTTCCCAGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA-GAAGCAACGAGT 123558 Query 75843 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATG 75902 |||| | |||||| | |||||| | |||| ||||||||| ||||||| | Sbjct 123557 TTCTTACGCCATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCACAGATCTGTGG 123498 Query 75903 GTACAACATCCCAGAGATCGTATTGTAGAATTCC 75936 | | |||||||| | ||||| || || ||||| Sbjct 123497 GCATGACATCCCACATGTCGTACTGGAGGATTCC 123464 Score = 95.1 bits (104), Expect = 2e-14 Identities = 199/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 76928 TAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 76987 ||||||||||| || || ||||| ||| | || || || ||| || | |||| | Sbjct 122239 TAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAGGT 122180 Query 76988 -TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAG 77046 || | || | || || |||| || ||| || || ||||| | || || || | Sbjct 122179 CTGGGC-GTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACAT 122121 Query 77047 TAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACG 77106 | ||||| ||||| || ||| || ||||| | ||| || || || | ||| | Sbjct 122120 GAAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCCT 122061 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTT 77166 ||||||||| ||||| || | ||| ||| |||| || || |||| | || || | Sbjct 122060 CATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATACGACCT 122001 Query 77167 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||| ||||| || ||||| |||||||| || || |||| ||||||||||| Sbjct 122000 CTCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAAATAAT 121947 >seq7443 Length=177603 Score = 86.0 bits (94), Expect = 9e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 170063 TAGAAGGTTTGGTTTTAAAAGATATTAATG-GTATATATGAGCCAGGAAAACGTAGATGG 170121 |||| ||||||||||||||||| | |||| |||| || || || |||||||| ||| Sbjct 17013 TAGAGGGTTTGGTTTTAAAAGACA-CAATGAGTATTTACGAACCCGGAAAACGCCTTTGG 16955 Query 170122 CTTAAAATAAAGAGAGACTACTTGAATGAGGGTTCGATGGCGGATTCTGCAGATTTAGTA 170181 || ||| | || | ||| || ||| ||| || | |||||||| ||| ||||| || Sbjct 16954 CTCAAAGTGAAAAAAGATTATTTGTTTGATGGAGCCATGGCGGACAGTGCGGATTTGATA 16895 Query 170182 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTATTTTTGATG 170241 || | || || | || || | ||| ||| || || |||||| | || ||| | ||| Sbjct 16894 GTGCTAGGTGCTTGGTACGGTAGTGGACAAAAAGGAGGTATGATGTCTGTGTTTCTCATG 16835 Query 170242 GGTTGCTAC 170250 || || ||| Sbjct 16834 GGATGTTAC 16826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712861431164160