Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq1946 387 4e-103 seq8067 116 1e-21 seq4971 109 1e-19 >seq1946 Length=1784 Score = 387 bits (428), Expect = 4e-103 Identities = 672/964 (70%), Gaps = 16/964 (2%) Strand=Plus/Minus Query 23979 TGGCGAGCCGAGATAAGTGTAAACGGAATTCGCGAAAGTGCAACCTTTGATACAAAAGCT 24038 ||||||| ||||| ||||| || || | ||| |||||||| || || ||||| || || Sbjct 1767 TGGCGAGTTGAGATTAGTGTGAATGGTACTCGGGAAAGTGCGACATTCGATACTAAGACT 1708 Query 24039 CAGGCTAGGGCTTGGGCATCTAAACGCGAGACTCAGTTACGCGAACAATCGCATGGCAAA 24098 |||||| | || |||||||| ||||| || ||| | ||| | || ||| | || || Sbjct 1707 CAGGCTCGCGCATGGGCATCAAAACGTGAAACTGAATTAAGAGAGTTATCACGCGGAAAG 1648 Query 24099 TTACCAGATCACTCTTTTTTAGAAGCTATTGAACGCTATCTTAATGAAGTAAGTATAAAG 24158 | || ||| | | || || ||||| | || | | ||||| || |||| Sbjct 1647 CTTCCTGATTATACATTAAATTGTGCAATTGATAGATACATAGAAGAAGTGTGTCCAAAG 1588 Query 24159 AAGAAAACTCATGAGAATGAAGTCAAGCGAATGGCTTTCTTCAAGCGTGAGTATAAAAAG 24218 | ||| ||| || | ||| || | ||| || | | | |||| Sbjct 1587 CACAAAGGCTGTGATGCAGAGATTAAGAGATTCCGAGCATTCCAGAGAAACTTCCCAAAG 1528 Query 24219 CTATGTCAAAAA-CAGTTGTCAAAAGTTACCACTGACGATTTAGTCCAGTGGCGTGACTC 24277 | || |||||| || | | ||| |||| ||||| ||||| || ||||||||| | Sbjct 1527 AT-TGCCAAAAAACATATTGCTAAAATTACGACTGATGATTTTGTGGTGTGGCGTGATAC 1469 Query 24278 CCGATTAAAAGAAGTGCAAGGTG-CTACTGTCAGACGTGAAG-CAA-ATATTTT-AGCTT 24333 | | ||||| ||| |||| | | | || ||||||| | ||| ||| | | ||||| Sbjct 1468 CAGGCTAAAAACAGT-CAAGCCGGCCTCGGTACGACGTGAGGGCAACATACTGTCAGCTT 1410 Query 24334 CCTTATTTACTGTTGCTCGCAAAGAATGGAAATGGATTAAAGAGTCGCCTATGGCTGACC 24393 | ||||| || || |||| |||||||| ||| || | || || || ||| ||| Sbjct 1409 ---TGTTTACAGTAGCGCGCACGGAATGGAAGTGGGTTTATGATTCACCCATGAGTGATT 1353 Query 24394 TCACTTTACCCCCACCATCAAAGCACCGTGATAGACGAATTACCCAAGATGAAATTGATA 24453 | | | || |||||| || || || ||||| || || | | ||||| ||| | | Sbjct 1352 TAAAGATGCCACCACCACCAGCACATCGCGATAGGCGCATATCAGAGGATGAGATTTACA 1293 Query 24454 GATTATGTCTTGCAGCAAATTGGGATAACAATGTTCCTGTGAATTCAACTCAGCAAATTA 24513 | | ||||| || || | | ||| | | | |||| ||||| || |||||||||| Sbjct 1292 GGCTTTGTCTGGCTGCTGAATTTGATGATCAGGCACCTGAGAATTTCACACAGCAAATTA 1233 Query 24514 TTATTGCCTTTCTTTTTGCAATCGAAACTGCAATGCGTGCTGGTGAGATTGTTGGCTTGA 24573 | || || || || || || || ||||||||||||||||| |||||||| |||| ||| Sbjct 1232 TGATCGCTTTCCTGTTGGCGATTGAAACTGCAATGCGTGCCGGTGAGATCCGTGGCCTGA 1173 Query 24574 CTTGGGATCGTATTTATTTAAAAGATAGATATTTAGTTTTAAATGAAACAAAGAATGGTA 24633 |||||||||| |||||||||| |||||||| | ||| |||||||| |||||||| | Sbjct 1172 CTTGGGATCGGGTTTATTTAAAGAATAGATATGTGACTTTGAATGAAACCAAGAATGGAA 1113 Query 24634 CTAAACGAAATGTACCACTATCTAAGCGTGCAGTTGAGTTGCTTACTTTATTAAAAGGTC 24693 | |||||| |||| || || || ||||| || ||||| |||||| || | || ||| Sbjct 1112 CAAAACGACATGTGCCCCTGTCCAAGCGCGCTGTTGAATTGCTTGAGTTGATGAAGGGTG 1053 Query 24694 TTGATAAAAAGCAGGTCTTTAC-TTGTA--ATTCCCAAAGCTTTGATACGCTTTGGCGTA 24750 ||| | | ||||| ||||| || | |||| ||||||||||| || ||| | | Sbjct 1052 TTGGCAGTCATCAGGTTTTTACGGTGAAAGATTC---GAGCTTTGATACACTCTGGAGAA 996 Query 24751 AATTGAGAGATAGATGTCAAATCACTGACTTGCACTTTCATGACACACGCCATGAAGCTT 24810 | ||| |||||| ||| |||| || ||||| ||||| ||| || | |||||||| | Sbjct 995 AGTTGCGAGATAAGTGTGAAATTGAAGATTTGCATTTTCACGACTCAAGACATGAAGCAT 936 Query 24811 GTACACGCCTTGCAAGGAAATTAGAAGTTTTAGACTTGGCCCGTATGATTGGGCATAAAG 24870 | ||||| ||||| |||||| ||||| || || ||||| || ||||| |||||||||| Sbjct 935 GCACACGGCTTGCTCAGAAATTGGAAGTATTGGATTTGGCGCGGATGATCGGGCATAAAG 876 Query 24871 ACTTAAGAAGCTTGATGGTCTATTACAATGCTACTGCAAGCGAAATTGCAACGAGGCTTG 24930 | ||||||||| ||||| | ||||||||||| |||||| || ||||||| ||||| | Sbjct 875 ATTTAAGAAGCCTGATGATTTATTACAATGCAACTGCATCAGAGATTGCAAATAGGCTGG 816 Query 24931 ATTA 24934 |||| Sbjct 815 ATTA 812 >seq8067 Length=1101 Score = 116 bits (128), Expect = 1e-21 Identities = 253/374 (68%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 22967 TTTGAGGGCAAGCGCCTTAATGCGTATGATGATGGGGTGGGTGTTTGGACTATTGGTTTT 23026 ||||| ||| ||| || || || ||||||||||| || ||||| ||||||||||||| | Sbjct 235 TTTGAAGGCCTGCGACTGAAAGCCTATGATGATGGTGTAGGTGTATGGACTATTGGTTAT 294 Query 23027 GGAACCATTAAGTATCCGAATGGTGTCCGAGTGAAAAAAGGTGATACCTGCACTGAACAG 23086 || |||| || || || ||||| | || || |||||||| ||||||||||| | Sbjct 295 GGCACCACAAAATACCCAAATGGCATACGTGTCAAAAAAGGGGATACCTGCACACTGGAT 354 Query 23087 CAAGCTGAAACCTATTTGAAAAATGATTTAACTAAG--TTTGAAGTAG-CTATTAATAAA 23143 || || || | ||| || | || || ||| ||| |||| || || || | |||| Sbjct 355 CAGGCCAAAGCTTATATGCAGAACGACCTAA--AAGCATTTG-AGCAGACTGTAAATAGT 411 Query 23144 TTAGTTAAAGTGCCTCTTAGTCAGAATCAATTCGATGCACTAGCATCTTTCACATATAAT 23203 ||| ||||| || | ||||| ||||| |||||||| |||| || | | || || Sbjct 412 GCAGTCAAAGTTCCAGTCAGTCAAAATCAGTTCGATGCCCTAGTTTCACTGGCCTACAAC 471 Query 23204 CTTGGTGAAACCAATTTAGCAAATTCAACTTTATTGAAGAAACTTAATAAAGGTGACTAT 23263 |||| ||| || |||||| ||||| | || | | ||| |||| | ||| Sbjct 472 ATTGGATCAACTGCATTCAAAAATTCCACTTTGGTCAAACGATTGAATGAAGGAAATTAT 531 Query 23264 CAAGGCGCTGCTGACCAATTCCTTGTCTGGAATAAGGCAGGAGGCAAAGTTATGAAAGGT 23323 ||| || || | || || ||| ||| || || || ||||| ||| ||||| Sbjct 532 AAAGCTGCAGCCAATCAGTTTGATGTATGGGTGAATGCCGGTGGCAAGCGCATGCAAGGT 591 Query 23324 CTAGTTCGTCGCCG 23337 || || |||||| Sbjct 592 CTGGTCAATCGCCG 605 Score = 113 bits (124), Expect = 1e-20 Identities = 97/119 (82%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 11556 GATGGTTATGGCATCGGCTAGTTTACAAAAGAATACAAATAAAGCATCCTATTATGGGTG 11615 ||||| ||||| || |||||||||||| | |||| |||||||||||||| | ||||| Sbjct 978 GATGGCTATGGTATTAGCTAGTTTACAATTAATTACAGATAAAGCATCCTAT-AGGGGTG 1036 Query 11616 CTTTATTTTTATGAGTATAAAATGGTAATTGATAACATATTATTACTAAGAACAATTTT 11674 ||||||||||||| | | || |||| |||||| || || ||| | ||||||||||| || Sbjct 1037 CTTTATTTTTATGTGAACAATATGGAAATTGACAATATTTTACTGCTAAGAACAATCTT 1095 >seq4971 Length=6473 Score = 109 bits (120), Expect = 1e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22979 CGCCTTAATGCGTATGATGATGGGGTGGGTGTTTGGACTATTGGTTTTGGAACCATTAAG 23038 || || ||||| || |||||||| |||||||| ||||| ||||||| ||| |||| || Sbjct 5662 CGGCTCAATGCCTACGATGATGGCGTGGGTGTATGGACCATTGGTTATGGCACCACAAAA 5603 Query 23039 TATCCGAATGGTGTCCGAGTGAAAAAAGGTGATACCTGCACTGAACAGCAAGCTGAAACC 23098 || || |||||| | || || |||||||| ||||||||||| ||||||| ||| | Sbjct 5602 TACCCAAATGGTATTCGTGTCAAAAAAGGGGATACCTGCACACTGGAGCAAGCCAAAAGC 5543 Query 23099 TATTTGAAAAATGATTTAACTAAGTTTGAAGTAGCTATTAATAAATTAGTTAAAGTGCCT 23158 || || || |||| || | || || || | | | |||| ||| || || || Sbjct 5542 TACATGCAACATGACTTGAAAAAATTCGAGCAAACCGTCAATAGCGCAGTCAATGTTCCG 5483 Query 23159 CTTAGTCAGAATCAATTCGATGC 23181 | | ||||||||| || ||||| Sbjct 5482 ATCAATCAGAATCAGTTTGATGC 5460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130262533016616