Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7453 138 3e-27 seq6233 134 3e-26 seq1586 134 3e-26 seq6955 131 4e-25 seq5761 120 7e-22 seq7010 114 3e-20 >seq7453 Length=213858 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| ||||| || ||||||||||| || | ||||| | |||||||| || Sbjct 107687 ATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCTTCCAGCTG 107746 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||||||||| |||| ||||||||| | | ||| || || || || || ||||| Sbjct 107747 CTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATTTT 107806 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | ||||| ||| || |||||||| || || |||||||| Sbjct 107807 GGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTGCCCGT 107866 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||||||||| |||||| Sbjct 107867 CAGAGTCTTCACGAAGATCTGCAT 107890 >seq6233 Length=1575 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| ||||| || |||||||| || || | ||||| | |||||||| || Sbjct 617 ATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTG 558 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||||||||| |||| ||||||||| | | ||| || || || || || ||||| Sbjct 557 CTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATTTT 498 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | | ||||| ||| || |||||||| || || || ||||| Sbjct 497 GGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGT 438 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||||||||| |||||| Sbjct 437 CAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| ||||| || |||||||| || || | ||||| | |||||||| || Sbjct 2055 ATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTG 1996 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||||||||| |||| ||||||||| | | ||| || || || || || ||||| Sbjct 1995 CTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATTTT 1936 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | | ||||| ||| || |||||||| || || || ||||| Sbjct 1935 GGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGT 1876 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||||||||| |||||| Sbjct 1875 CAGAGTCTTCACGAAGATCTGCAT 1852 >seq6955 Length=469295 Score = 131 bits (144), Expect = 4e-25 Identities = 157/210 (75%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||||||||| ||||||||||| |||| | ||| | |||||||| | Sbjct 94390 CAAG-TGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCTTCCA 94332 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || ||||| || || | ||||||||| | | ||||||||| || || || Sbjct 94331 ATTGCTTT--CCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTGTCCTG 94274 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| || ||| |||| | |||||||| || ||||| | ||| || ||||| Sbjct 94273 GATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGGTTTT 94214 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || |||||||||| |||||| Sbjct 94213 TCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || |||||||||||||| ||||| | || || | |||||||| | Sbjct 94615 ATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAACTG 94556 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || | | || ||||| | | ||||||||||| |||||||| || Sbjct 94555 TTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTT 94496 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || |||| | ||||||| || || ||||| || ||||||||||| || Sbjct 94495 GGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGATAGTTTTGCCAGT 94436 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||||||| | |||||| Sbjct 94435 CAAAGTCTTCACGAAAATCTGCAT 94412 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 ||||| || | |||||||| || || || || ||||||||||| | |||||| | || Sbjct 95766 CTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGATAAAGTGCGGCCG 95707 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | ||| || ||||| || | |||||||||||| | | || ||||| || Sbjct 95706 TCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 95647 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||| ||| |||| | | ||||||| || ||||| | ||| ||| Sbjct 95646 TCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCACTTCCAAAGTGATA 95587 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || || || |||||||| | |||||| Sbjct 95586 GTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 116 bits (128), Expect = 9e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 ||| || |||||||||||||| ||||| | || || | |||||||| | ||| || Sbjct 95977 AGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCC 95918 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 ||||| || || ||||| ||||| | | ||||||||||| || || || ||| || Sbjct 95917 TGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 95858 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | | | || || || |||||||| |||||||||||||| || ||||| Sbjct 95857 AACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGT 95798 Query 152087 CTTCACGAAGACCTGCATT 152105 || || || | ||||||| Sbjct 95797 TTTAACAAAAATCTGCATT 95779 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 ||||| || | |||||||| || || || |||||||||||||| | ||||||| || Sbjct 95310 CTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCG 95251 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | ||| || ||||| || || ||||| ||||| | | |||||||| || Sbjct 95250 TCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTG 95191 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||| ||| | || | | || ||| ||| |||||||| ||||| Sbjct 95190 TCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATG 95131 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || ||||| || || || | |||||| Sbjct 95130 GTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| | ||| || ||||| ||||||||||| || | || || Sbjct 94860 CTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 94801 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||||| ||| ||||| || || | |||||| ||||| | | |||||| Sbjct 94800 CGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCT 94741 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || ||| ||| | || | | | || || || |||||||| Sbjct 94740 TCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGT 94681 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| |||||||| || || || || || || | |||||| Sbjct 94680 GTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 113 bits (124), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| | || | ||| | ||| ||||| ||||| |||||||| || | |||||| Sbjct 95089 CCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGT 95030 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | ||||| || | ||||| || || ||||| | ||||||||||| | | || Sbjct 95029 GCGTCCATCCTCCAACTGCTTT--CCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATG 94972 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| ||||| || || || || |||| | ||||||| || ||||| Sbjct 94971 CCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCC 94912 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | |||||| |||||||| || | ||| |||||||||| |||||| Sbjct 94911 AAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 96.9 bits (106), Expect = 8e-15 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| || | ||||| || || || |||||||||||||| |||| | || Sbjct 95544 CTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTG 95485 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || | ||||| || || ||||| || | ||||||||| | | ||| | Sbjct 95484 CGGCCATCCTCCAACTGCTTT--CCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGC 95427 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| || || ||| || | || | | | ||||| || ||||| | Sbjct 95426 CTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCA 95367 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || ||||| || || || || || || |||| |||||| Sbjct 95366 AAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 >seq5761 Length=8615 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | |||||| || || || || ||||||||||| |||| || || | || Sbjct 314 TCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 255 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | || || |||||||| | | |||||| || | | || |||||||| Sbjct 254 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 195 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || |||||||| ||| ||| | || | | ||||||| ||| || ||||| || || Sbjct 194 GTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 135 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| |||||||| | ||||| Sbjct 134 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||||| || || || || ||||||||||| |||| || || | || Sbjct 8691 TCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 8750 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | || || |||||||| | | |||||| || | | || |||||||| Sbjct 8751 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 8810 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || |||||||| ||| ||| | || | | ||||||| ||| || ||||| || || Sbjct 8811 GTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 8870 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| |||||||| | ||||| Sbjct 8871 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153699754102148