Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq6955 96.9 3e-15 >seq6955 Length=469295 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||||||||| | || || ||||||||||| | ||| || || Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || ||| | || ||| || || ||||||||||| ||||| || || Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| || || |||| || || |||||||||||||| |||| || | ||||| || Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTG 111309 || || || ||||| || || || || ||| Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTG 95305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| || || || ||||| |||||||| || || | || ||||| Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || ||| || ||| ||||| ||||| ||||| || ||| Sbjct 94472 GACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAA 94531 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATA 111277 ||| | | |||| || |||||||| ||||||||| | | |||| | ||||||| Sbjct 94532 CAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTAT--CAGATTATA 94589 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||||||| || || ||||| |||||| | || | ||||| Sbjct 94590 ACATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGG 94638 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| | || |||||||| ||||| | ||| ||||| Sbjct 94639 AATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATC 94698 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || ||| || ||| ||||| ||||| |||| || || Sbjct 94699 TGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCA 94758 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| ||| | |||| ||| |||||||| || |||||| || || | || || || Sbjct 94759 ACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACAA 94818 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || ||||||| || ||| | ||| | || || Sbjct 94819 CATCCAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGAGGAGG 94866 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| |||||||| ||||| |||| |||||||| ||||| | ||| ||||| Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATC 95838 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | || || ||| || ||||| ||||| |||| || || Sbjct 95839 TGATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCA 95898 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111276 ||| || || |||| || |||||||||||||||||| | | |||| | |||||| Sbjct 95899 ACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTAT--CAGATTAT 95956 Query 111277 AATATACAAAAAGAATCTAC 111296 || || ||||||||||| || Sbjct 95957 AACATCCAAAAAGAATCCAC 95976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| || ||||| |||| || ||||| || || ||||| ||||||| Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | || ||| || || |||||||||||| |||| || || Sbjct 95611 AGACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCA 95670 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||| | |||| || ||||||||||||||||| ||| | | ||||| || Sbjct 95671 GCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAA 95730 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTG 111309 ||||| || ||||| || || || || ||| Sbjct 95731 CATACAGAAGGAATCCACTCTTCACTTGGTG 95761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421769106933088