Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq2768 246 2e-60 >seq2768 Length=8677 Score = 246 bits (272), Expect = 2e-60 Identities = 472/691 (68%), Gaps = 16/691 (2%) Strand=Plus/Minus Query 51624 ACTGATCTTCATAGATATGAAGATTAATAATCTTTTGACGAGCAATACCTGGCTTAAGAC 51683 ||||||| ||||| ||||| ||| | |||||| ||| ||| | || | |||| | | Sbjct 1788 ACTGATCCTCATAAATATGCGCATTCACAATCTTGTGATAAGCCTTTCCAGCCTTATGTC 1729 Query 51684 CTGTAATCTGTGCCATAATAGCTAGAAGTGCATAGCATTGCACCATATTAAATACTTGGC 51743 ||||||| || ||||| | ||||| || | | | || | ||||| ||||| Sbjct 1728 CTGTAATTTGAGCCATCAGAGCTAACAGAGTAAAAACCTGAATTTGGTTAAAATTTTGGC 1669 Query 51744 CCAGCAAG--AAATCATTAGACCTCTGGAAAGAGTTTAGGTATAGTGTATCACCTAAAAT 51801 ||| ||| | |||| || | || | || ||| ||| |||||||| |||| | Sbjct 1668 CCA--AAGGTACATCACACGAACGTTGTGATGATGTTAAGTAAAGTGTATCCCCTACCAA 1611 Query 51802 AGAGAATTGATGGGTATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCAGGGTT 51861 |||||| ||| ||||||||||| || |||||||| || || ||| ||||| ||||| Sbjct 1610 AGAGAAGGTATGAGTATGCATACAAGGTCGTAGGCAACCCATATCAAACTCCCCTGGGTT 1551 Query 51862 CCAAAAAGTTAAAATTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTTT 51921 | ||||| | |||||| |||||||| ||||| ||| || || | || ||||| || Sbjct 1550 ATAGAAAGTCAGAATTTCACCACGATCATCAATACCTTTTCGTAAGTCATCATAGATCTT 1491 Query 51922 GGCTAACTGATCAAATACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATA 51981 | ||| ||||| | |||| ||||| ||| |||||| || ||||| || || || Sbjct 1490 ACGAAGCTGGTCAAACTCTTTACCTTCAGAGTTACGCCAATGGCGCCCTTGGACTCCGTA 1431 Query 51982 GACTCGTCCCATATCATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTTC 52041 ||||| ||||||||||| || |||||||| | || ||| ||| ||| || |||||| Sbjct 1430 TACTCGCCCCATATCATCTTCACCTTTACGATAAGGGTTAGCTAACCAAGCTCCATTTTC 1371 Query 52042 ATTTGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTA 52101 || ||||| |||||||| |||||| ||||| || ||||| || || || ||| || Sbjct 1370 GTTAGCATTTGCATTCCAAGTATTACAGCCAATGGCTCGGAACTGAGCAGCATTGTCATA 1311 Query 52102 CCCACGGAGATATCCGATCATTTCCATTATTGCTTGTTT--AGCAAATGCTTTACGAGTA 52159 ||||| | || || | | || || ||| || || || | ||| || || Sbjct 1310 TCCACGCAAGTAGCCTAATAGCTCAGCAATAGCTGCCTTCCAGTAACT--TTTTCGGGTC 1253 Query 52160 GTTACTAGCGGCAGTTCTCCTGCTCCTACGTTAAAGGTA----AAGTCTGCATCAATAAT 52215 || |||| || | ||| || ||||||| |||| || || |||| ||||| Sbjct 1252 GTAACTAAGGGGAATTCATTCGCCCCTACGT----GGTACTCTAAATCAGCATTAATAAC 1197 Query 52216 GGTTAGGCAACGAACCCCTGTTCTAGGATTCGTTACCCATACACCCTCTTCAAGAATACG 52275 ||||| ||||| || |||| ||| |||||||| || || |||| || || Sbjct 1196 GGTTAAACAACGCTTTCCAGTTCGCTCATTTTCAACCCATACGCCTTCATCAACTATGCG 1137 Query 52276 TTTTCCAGTTTCAATATATTGCTTCATTTAA 52306 || | || | |||||||||||||||| Sbjct 1136 TTGACACAAATCTAGATATTGCTTCATTTAA 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365214751126188