Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6955 170 4e-37 seq7453 147 5e-30 seq5761 131 4e-25 seq7010 125 1e-23 >seq6955 Length=469295 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||| | ||| ||||||||||||||| || || | || ||||||||||| || Sbjct 94620 ACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCC 94561 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||||| || || || ||||| ||||||||||| ||||| || ||||||||||| Sbjct 94560 AACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGA 94501 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| ||||| ||| | || |||||||| || | ||| || || || ||||| || || Sbjct 94500 ATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGATAGTTTTG 94441 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| |||||||| Sbjct 94440 CCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 159 bits (176), Expect = 7e-34 Identities = 151/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||| | ||| |||||||||||||| | || || || ||||| Sbjct 95515 TTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAA 95456 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | ||| || ||||| || || || ||||||||||||||||| ||||| ||| | Sbjct 95455 GATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTT 95396 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| || || || ||||| ||||| | |||||| || || || |||| || ||||| Sbjct 95395 TTCGATGGTATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAAC 95336 Query 283088 GAATATCTGCATT 283100 || || |||||| Sbjct 95335 AAAGATTTGCATT 95323 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||| || ||| || ||||| ||||||||||||| | ||||| |||||||| Sbjct 95076 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCCATCCTCC 95017 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | || || || ||||||||||| | || ||||| ||||| || |||||||||||| Sbjct 95016 AACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 94957 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || ||| | || || ||||| || | ||| ||||| | ||| ||||| || Sbjct 94956 ATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAATCGTTTTG 94897 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| || ||||| || |||||| Sbjct 94896 CCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 145 bits (160), Expect = 2e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||||||||| || || | || ||||||||||| || | |||||| || || || Sbjct 95971 TTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCTGCGAA 95912 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| | |||||||| ||||| || |||||||| ||||||||||| || || | Sbjct 95911 AATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTAACATT 95852 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| || || || | ||||||||| || || || || || || |||| ||| ||||| Sbjct 95851 TTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTTTTAAC 95792 Query 283088 GAATATCTGCATT 283100 || ||||||||| Sbjct 95791 AAAAATCTGCATT 95779 Score = 136 bits (150), Expect = 8e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| ||| |||||| |||||||||||||||| | || || ||||| ||| Sbjct 94848 ACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCT 94789 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||||| |||||||| || || | |||||||| ||||| || |||||||| || Sbjct 94788 AACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGA 94729 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| ||||| || | || || || || || | ||||||||| || || || || || Sbjct 94728 ATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTAATTGTTTTG 94669 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || | || || || || || |||||| Sbjct 94668 CCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||| | ||| ||||| ||||| || | ||| || || || || Sbjct 94374 TCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAA 94315 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || ||||| || || || || ||||| ||||| || || || || | Sbjct 94314 ATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTC 94255 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||| ||| ||||| | |||||| || || || || || || || ||| Sbjct 94254 TCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACG 94195 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 94194 AAGATCTGCAT 94184 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || ||||||||||| |||| | || ||||| || || | |||||| || || || Sbjct 95287 TTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAA 95228 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| | |||||||| ||||| || || ||||| |||||||| ||||| || | Sbjct 95227 AATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATT 95168 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || ||||| || |||| |||||||| || || || || || || || | ||| || || Sbjct 95167 TTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGAC 95108 Query 283088 GAATATCTGCATT 283100 || || |||||| Sbjct 95107 AAAAATTTGCATT 95095 >seq7453 Length=213858 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||| || ||| || || |||||||||||||| | | ||||| ||||| || Sbjct 107682 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCTTCC 107741 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || ||||| ||||||| || || ||||| || || ||||| || || ||| Sbjct 107742 AGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGG 107801 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 || || ||||| || | |||||||| || || | ||||| || |||||||| ||||| Sbjct 107802 ATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTG 107861 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| |||||| ||||| |||||||| Sbjct 107862 CCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq5761 Length=8615 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||| ||| | ||| ||| || |||||||||||||| | || || || ||||| Sbjct 310 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCT 251 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | || || || || ||||||||||| || || || || || || |||||||| Sbjct 250 TCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCC 191 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 || || || |||||||| | ||||| ||||| || | ||||| || || ||||| ||| Sbjct 190 TGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTC 131 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || | ||| || ||||| || ||||| Sbjct 130 TTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | || || || ||||| || | || || || || || Sbjct 8715 TTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAA 8774 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||||||| || || || || || || |||||||| || || || |||||||| | Sbjct 8775 GATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATT 8834 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || | ||||| || || ||||| |||||||| || | ||| || || Sbjct 8835 TTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCAC 8894 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 8895 GAAAATTTGCAT 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046629387898952