Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq7343 224 1e-53 >seq7343 Length=933009 Score = 224 bits (248), Expect = 1e-53 Identities = 552/830 (67%), Gaps = 14/830 (2%) Strand=Plus/Minus Query 23207 TAACACCCATTTTTTGATATTCCCCAACACGTCTTT-CGAAAAAATTTGTCTTACCCTCT 23265 ||||||| | ||| || ||||| || || | ||||| ||||||| || ||||| |||||| Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGAC-CTTCTTTTCGAAAAAGTTGGTCTTGCCCTCT 375228 Query 23266 AATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT 23325 ||||| | ||||||||| || ||||||| |||||| || || ||| Sbjct 375227 GTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCG 375168 Query 23326 AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTT 23385 | |||| ||| || | || || |||||||| || || || ||||| | | |||| Sbjct 375167 AGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTC 375108 Query 23386 ATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCA 23445 || || || || | || || | ||||| | | || | ||| || ||| ||| Sbjct 375107 ATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCA 375048 Query 23446 TCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTA----AA 23501 ||| ||| || | | ||| ||| | || || | ||| || | || || Sbjct 375047 TCTCGAATAATGC---CCGTCACTCTTTCTTT-GGAGGGTTTTTGAACGAGATAGGAGAA 374992 Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 | |||||| ||||| |||||||| | ||||| || || |||| |||||| ||||| Sbjct 374991 TAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAA 374932 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGA 23621 ||| | || ||||| || || ||||| |||| ||| || || | |||||| || || Sbjct 374931 TGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGA 374872 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA 23681 || || || || || ||||| || || || || | | |||||||| | | | Sbjct 374871 GAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTT 374812 Query 23682 --ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 | | || |||| || | ||| | || ||| ||||||| || ||||||| Sbjct 374811 GGAGCTGA--TCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCA 374754 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 ||||| || || | ||| |||| | || ||| | || || || ||||| || | Sbjct 374753 ATTGCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATG 374694 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 || ||||||||||| ||||||||||| || || || ||||||||||| ||||||||||| Sbjct 374693 CTGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCC 374634 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 || | | ||| || || | |||| || | | ||||||||| ||||| |||||| Sbjct 374633 TCGGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCA 374574 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT 23979 || || || || || || |||| ||| || || ||||||| ||| | || Sbjct 374573 GATGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTA 374514 Query 23980 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 ||||||| || | |||| |||| || ||||| || |||||||| Sbjct 374513 TTCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAA 374464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521434625703200