Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6955 183 7e-41 seq5761 165 2e-35 seq7010 163 7e-35 seq6233 158 3e-33 seq1586 158 3e-33 seq7453 143 6e-29 >seq6955 Length=469295 Score = 183 bits (202), Expect = 7e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||| | || || ||||| ||||| || ||||| ||| |||||| Sbjct 94415 CAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCAGAC 94474 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| ||||| |||||||| || || ||||| ||| Sbjct 94475 ACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAACAA 94534 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| || |||||| | |||||||| | || || | ||||||||| || Sbjct 94535 CGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAACATC 94594 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || |||||| | || |||||| | ||| Sbjct 94595 CAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGA 94633 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || |||||||| ||||| | || |||||| |||||| Sbjct 94187 CAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTCAGAC 94246 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || || |||||||||||||||||||| || |||||||| Sbjct 94247 ACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCAGACCAGCAG 94306 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| || | ||||||||| | |||||| |||| || ||| || Sbjct 94307 CGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAACATC 94366 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || || | |||||| | || ||| Sbjct 94367 CAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGA 94405 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || |||||||| ||||| | || |||||| ||||||| Sbjct 95555 CAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTCAGAC 95614 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| |||||||||||||| || ||||| |||||||| Sbjct 95615 ACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCAGCAG 95674 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| || ||||| | ||||| || | ||| | | ||||| ||| | Sbjct 95675 AGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAACATA 95734 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 95735 CAGAAGGAATCCACTCTTCA-CTTG 95758 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || || || || ||| || || Sbjct 94643 CAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATCTGAT 94702 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| |||||||||||||| |||||||| ||||| ||||| || Sbjct 94703 ACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAACAG 94762 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || ||||| |||||| | ||||||||| | || | | || || ||| || Sbjct 94763 AGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACAACATC 94822 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || | ||| | ||||||||||| ||| Sbjct 94823 CAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGA 94861 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||||| || || ||||| || || || || || ||| || || Sbjct 95783 CAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATCTGAT 95842 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| |||||||| |||||||| ||||| ||||| || Sbjct 95843 ACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCAACAG 95902 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| || ||||| | |||||||| | || || | ||||||||| || Sbjct 95903 AGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATAACATC 95962 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 95963 CAAAAAGAATCCAC 95976 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||| | || || |||||||| || | || |||||| ||||||| Sbjct 94871 CAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTCAGAC 94930 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||| || ||||| ||||| || || || |||||||| Sbjct 94931 ACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAG 94990 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| ||| | || |||||| | ||| | | || || ||| | Sbjct 94991 AGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAACATT 95050 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||| || || || ||||| | || |||||| Sbjct 95051 CAAAAGGAGTCCACTTTGCATTTGGTGTTGAGA 95083 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || |||||||| || || || || || || || || Sbjct 95099 CAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTCTGAT 95158 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| ||||||||||||||||| || || ||||| || Sbjct 95159 ACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCAACAG 95218 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| |||||||| | ||||| || | ||| | | ||||| ||| || Sbjct 95219 AGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAACATC 95278 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 95279 CAGAAGGAATCCACTCTTCA-CTTG 95302 >seq5761 Length=8615 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| || || || |||||||| ||||| || |||||| Sbjct 102 CAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCAGAC 161 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || ||||||||||| ||||| || ||||| || ||||| Sbjct 162 ACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCAGCAG 221 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | ||||||||| | || || |||| || ||| || Sbjct 222 CGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAACATC 281 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || ||| | || | ||| | ||| Sbjct 282 CAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGA 320 >seq7010 Length=35453 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| || || || |||||||| ||||| || |||||| Sbjct 8903 CAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCAGAC 8844 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || ||||||||||| ||||| || ||||| || ||||| Sbjct 8843 ACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCAGCAG 8784 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | ||||||||| | || || |||| || ||| || Sbjct 8783 CGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAACATC 8724 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 8723 CAGAAGGAATCCACCCTTCA-CTTG 8700 >seq6233 Length=1575 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || ||||| || ||||| || ||||| Sbjct 417 CAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCAGAT 476 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || || ||||||||||| || |||||||| |||||||| Sbjct 477 ACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACCAGCAG 536 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | ||| | | || |||||| || Sbjct 537 CGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAACATC 596 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || || || || ||||| | || ||||| Sbjct 597 CAGAAGGAGTCCACTTTGCATTTGGTGTTGAG 628 >seq1586 Length=2413 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || ||||| || ||||| || ||||| Sbjct 1855 CAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCAGAT 1914 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || || ||||||||||| || |||||||| |||||||| Sbjct 1915 ACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACCAGCAG 1974 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | ||| | | || |||||| || Sbjct 1975 CGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAACATC 2034 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || || || || ||||| | || ||||| Sbjct 2035 CAGAAGGAGTCCACTTTGCATTTGGTGTTGAG 2066 >seq7453 Length=213858 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || ||||| || ||||| || ||||| Sbjct 107887 CAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCATCAGAT 107828 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || || ||||| ||||| || |||||||| |||||||| Sbjct 107827 ACTATCGAAAATGTTAAAGCCAAAATCCAGGATAAAGAGGGCATCCCTCCCGACCAGCAG 107768 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | ||| | | || || ||| || Sbjct 107767 CGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACAACATC 107708 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || || || || ||||| | || ||||| Sbjct 107707 CAGAAGGAGTCCACTTTGCATTTGGTGTTGAG 107676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203604918064472