Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6233 129 5e-25 seq1586 129 5e-25 seq7453 125 7e-24 seq6955 116 3e-21 >seq6233 Length=1575 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||| ||||||||| ||||||||||| || | ||||| | || Sbjct 625 AACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCT 566 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||||||||| ||||| ||||| ||||| | || | || ||| |||||| Sbjct 565 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCC 506 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || |||| |||| ||| | | || || | ||| ||||| | || || || Sbjct 505 -TGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGT 447 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| ||||| ||||| |||||||| Sbjct 446 CTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||| ||||||||| ||||||||||| || | ||||| | || Sbjct 2063 AACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCT 2004 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||||||||| ||||| ||||| ||||| | || | || ||| |||||| Sbjct 2003 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCC 1944 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || |||| |||| ||| | | || || | ||| ||||| | || || || Sbjct 1943 -TGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGT 1885 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| ||||| ||||| |||||||| Sbjct 1884 CTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 1852 >seq7453 Length=213858 Score = 125 bits (138), Expect = 7e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||| ||||||||| ||||| ||||| || | ||||| | || Sbjct 107679 AACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCT 107738 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||||||||| ||||| ||||| ||||| | || | || ||| || ||| Sbjct 107739 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCC 107798 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || |||| |||| ||| | | ||| || | ||| ||||| | || || || Sbjct 107799 -TGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGT 107857 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| ||||| ||||| |||||||| Sbjct 107858 CTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq6955 Length=469295 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| |||||| ||| || || || |||||||| || || |||||||| | || Sbjct 94623 AACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCT 94564 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | ||| ||||| ||||| |||| || |||||||| | ||||| | |||||||| Sbjct 94563 TCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCT 94504 Query 41771 ATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| | || |||| |||| || |||||| | || ||||| | || || || Sbjct 94503 -TGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGATAGT 94445 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || |||| ||||| |||||||||||||| Sbjct 94444 TTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462256683185600