Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1705 196 5e-45 >seq1705 Length=717327 Score = 196 bits (216), Expect = 5e-45 Identities = 503/758 (66%), Gaps = 6/758 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 ||||| || |||| || ||| ||| |||||||||||||| || | ||| || || | Sbjct 625438 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTCCAAT 625497 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAA-AATATTTTAGAGTACCCCAG 16782 || || | ||||| || ||||| ||||| | | | | ||| |||| | | | | Sbjct 625498 GAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAATTCAA- 625556 Query 16783 TTCGGCGATTAATCTATCCGCTACAA-ATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 ||| | | ||| | ||| || |||| |||| ||||| | | ||||||||| | |||| Sbjct 625557 TTCTACCAATAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGAATTCA 625615 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || | || || | || || ||||| ||| || || || || || | Sbjct 625616 TGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACAGCAT 625675 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 | |||||||| | ||| ||||| || || || || ||| | ||||| | Sbjct 625676 CGATAATAATATCAACAATTCGTTGTGGTGATGGACGATTACGAATATGGTGAAACAATA 625735 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 ||||| ||||| ||||||||||| || || | || | ||| || |||||||| | Sbjct 625736 AGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAAAATGTAA 625795 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 || ||||| || ||||| || | |||||| || ||||| || || |||||||| | Sbjct 625796 GACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCAGAAAAAA 625855 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || |||| |||||| || || || ||||| ||| | || | | | Sbjct 625856 AGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAATCATCCT 625915 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 | |||| |||| | ||||||| | || ||| | | |||||| | Sbjct 625916 GGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACGTATGGCAT 625975 Query 17202 TAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACA 17261 | |||| |||| ||| | || || ||| |||| ||| | || |||| Sbjct 625976 TGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAATAATGAATACA 626035 Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTA 17321 |||| || || | || || ||||| || ||||| || ||||| || || ||||| | || Sbjct 626036 TTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTGCTTCTGGTA 626095 Query 17322 TTTGAACTTCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 |||| || | |||| | || ||||| || |||||||| || || || || ||||| || Sbjct 626096 TTTGTACAT-CACGAATAAAACGTTCGGCCAGATTTTCATTGACAATACCATCGCTTGCA 626154 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC 17418 || ||||| ||||||| ||| ||||||||| |||||| Sbjct 626155 GCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTC 626192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534563340080