Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1705 223 4e-53 >seq1705 Length=717327 Score = 223 bits (246), Expect = 4e-53 Identities = 588/883 (67%), Gaps = 16/883 (2%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 ||||| || |||| || || ||| ||||||||||| || || | ||| || || || Sbjct 625438 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTCCAAT 625497 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAA-AATATCTTAGAGTACCCCAG 16020 || || | ||||||||| ||||| ||||| | | | | ||| | || | | | | Sbjct 625498 GAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAATTCAA- 625556 Query 16021 TTCCGTAACTAATCTATCTGCTACAA-ATTCTATATATTGACACATTAAGTCGCAATTAA 16079 ||| | ||| | |||||| |||| |||| ||||| | ||||||| | |||| | Sbjct 625557 TTCTACCAATAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGAATTCA 625615 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || | | || || | || | || || |||| ||||| ||| || || | Sbjct 625616 TGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACAGCAT 625675 Query 16140 CTTTAATGATATCGGTGGCTCGTGTT--TCA--GACGGTGTATGGTTTAGGTGTTTAAAC 16195 | |||| ||||| |||| | | | |||| | || | | |||| |||| Sbjct 625676 CGATAATAATATCAACAATTCGTTGTGGTGATGGACGAT-TACGAATATGGTG---AAAC 625731 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 | || || || || || ||||||| |||||| || | || | ||| || ||||| Sbjct 625732 AATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAAAAT 625791 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 || | || ||||| || ||||| || | ||| || || || |||||||| || ||| Sbjct 625792 GTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCAGAA 625851 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 || || || || ||||| | |||||| || || || ||||| ||| | ||| | | | Sbjct 625852 AAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAATCA 625911 Query 16376 TTACGAATCCATTTCTGTA-CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 | | |||| | || |||||| ||||||| || || |||| | | ||| Sbjct 625912 TCCTGGGTCCAACG-TATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACGTAT 625970 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 ||| || || | |||| ||| | ||| || ||| |||| |||| ||| Sbjct 625971 GGCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAATAATGA 626030 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||||||||| || | || || ||||| || ||||| ||||| || || || || || Sbjct 626031 ATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTGCTTC 626090 Query 16555 CGCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | ||||||||| | |||| | ||| ||||| ||||| || ||||| || ||||| || | Sbjct 626091 TGGTATTTGTACAT-CACGAATAAAACGTTCGGCCAGATTTTCATTGACAATACCATCGC 626149 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 ||||||||||||| ||||||| || ||||||||| |||||| | | | | || Sbjct 626150 TTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTCAATTGAT 626209 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||||| | ||| || |||||||||||| ||||| || || | | Sbjct 626210 TCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGATGCTTCAG 626269 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | ||||||||||| ||||||| |||| ||||| || ||||| Sbjct 626270 CTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAA 626312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403494087920