Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq206 109 4e-19 >seq206 Length=237414 Score = 109 bits (120), Expect = 4e-19 Identities = 227/333 (68%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 18627 ACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGG 18686 |||||||| ||||| |||||| | | || || |||||| | |||||||| | | || Sbjct 142190 ACTACAAAACGTGTATTTTGGCGTGGTGTTGTCGAAGAGCTTCTATGGTTTCTACAAGGA 142131 Query 18687 TCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCG 18746 ||||| || || ||| | || | | |||| | || | || |||||| | | ||||| Sbjct 142130 TCAACTGACTCGAAAAAGCTGTCTGAAAAAGGTGTAAAAATCTGGGATGCAAATGGATCA 142071 Query 18747 AGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATT 18806 | ||||||| |||| ||| || | | || || || || || || | Sbjct 142070 CGAGAATTTCTCGATAGCCTTGGGTTTGCCGATCGTCAAGAAGGTGATCTAGGTCCAGTA 142011 Query 18807 TACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTA 18866 || || || || |||||||||||||| || |||||| |||| | || | ||| Sbjct 142010 TATGGTTTTCAATGGAGACATTTTGGTGCCGAATATCGAGACAAAAATTCCGATTATAAT 141951 Query 18867 CAGCAAGGAATCGATCAGCTGCAAACTG-TTATAGATACAATTAAAACAAACCCAGAAAG 18925 ||||| | ||||| | |||| | |||| |||| || |||||||| || ||| | Sbjct 141950 GCTCAAGGTGTTGATCAATTA-AAACAGCTTATCCATACGATCAAAACAAATCC-GAATG 141893 Query 18926 C-CGACGAATGATTATATCGTCTTGGAATCCAA 18957 || ||||||||||||||| |||||||||||| Sbjct 141892 ATCGTCGAATGATTATATCGGCTTGGAATCCAA 141860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399495693562770