Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq206 154 1e-32 >seq206 Length=237414 Score = 154 bits (170), Expect = 1e-32 Identities = 284/414 (69%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 ||||||||| | || | ||| | | ||| | || |||||||| || |||| || | Sbjct 141864 ATTCCAAGCCGATATAATCATTCGACGATCATTCGGATTTGTTTTGATCGTATGGATAAG 141923 Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGC 102045 |||||||||||| ||||| |||| | ||||||||| || |||||| || Sbjct 141924 CTGTTTTAATTGATCAACACCTTGAGCATTATAATCGGAATTTTTGTCTCGATATTCGGC 141983 Query 102046 TCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATA 102105 || ||||| ||||| ||||| ||||| || || || ||||| ||||| | | || Sbjct 141984 ACCAAAATGTCTCCATTGAAAACCATATACTGGACCTAGATCACCTTCTTGACGATCGGC 142043 Query 102106 AAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGC 102165 ||| ||||| |||| | |||| || |||||||| |||||||| || | || || Sbjct 142044 AAACCCAAGGCTATCGAGAAATTCTCGTGATCCATTTGCATCCCAGATTTTTACACCTTT 142103 Query 102166 TGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAAC 102225 | | || |||| ||| |||||| |||||| | |||||| | || ||||| ||||| Sbjct 142104 TTCAGACAGCTTTTTCGAGTCAGTTGATCCTTGTAGAAACCATAGAAGCTCTTCGACAAC 142163 Query 102226 ACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTC-TAAACTAAACC 102284 ||| | ||||||||| | || ||||| | | ||| ||| | || || | || Sbjct 142164 ACCACGCCAAAATACACGTTTTGTAGTGATCAATGGTAATGTTTGATCACGAAGTGAATA 142223 Query 102285 TAGAC--TGTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCATTTTT 102336 ||| ||||| ||||| | | ||| ||||| ||||| | ||||||||| Sbjct 142224 ACGACTTTGTGTACCAAACACCGAAAATGTACCAGTTCCTGTACGGTCATTTTT 142277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361243688910206