Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1705 114 1e-20 seq1489 114 1e-20 seq1658 105 6e-18 >seq1705 Length=717327 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||||||||| || ||||||||||| ||| |||||| | Sbjct 501744 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 501803 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || ||||| |||||||||||| | || ||| || Sbjct 501804 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 501863 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || | |||||||| || || ||| |||| ||| |||| || |||||||||| Sbjct 501864 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 501923 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| || ||||| | || |||||| | || || || Sbjct 501924 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGG 501971 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| ||||| || ||||| || ||| ||| |||||| | Sbjct 502657 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 502716 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || |||||| Sbjct 502717 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 502776 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| |||||||| | ||| || |||||||||| Sbjct 502777 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 502836 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| || || || Sbjct 502837 ATTCAGAAAGAATCCACCCTCCA 502859 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||||||||| ||||| |||||||| ||| || || | Sbjct 502201 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 502260 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || |||||| Sbjct 502261 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 502320 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || ||||| |||||||| | ||| || ||||| ||| Sbjct 502321 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAAT 502380 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| || || || | || ||||| |||| || || Sbjct 502381 ATCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGG 502427 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| || || || || || ||||| ||| ||||| | Sbjct 501973 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCG 502032 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | || |||||| |||||||||||| | || |||||| Sbjct 502033 GACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAG 502092 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | || ||||| || |||||||| |||||| | || | | ||||| || Sbjct 502093 CAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAAC 502152 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||||||||| || | || || || |||| || || Sbjct 502153 ATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 502199 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || ||||| || ||||| ||||| ||| || || || Sbjct 502429 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 502488 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| ||||||||||| | || |||||| Sbjct 502489 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 502548 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | || ||||| || ||||| |||||||| | ||| || |||||||| Sbjct 502549 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 502608 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || || ||||| ||||| || | |||||||| Sbjct 502609 ATCCAAAAAGAATCCACTCTCCATCTTGTGTTACG 502643 >seq1489 Length=23360 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||||||||| || ||||||||||| ||| |||||| | Sbjct 6245 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 6186 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || ||||| |||||||||||| | || ||| || Sbjct 6185 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 6126 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || | |||||||| || || ||| |||| ||| |||| || |||||||||| Sbjct 6125 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 6066 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| || ||||| | || |||||| | || || || Sbjct 6065 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGG 6018 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| ||||| || ||||| || ||| ||| |||||| | Sbjct 5332 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 5273 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || |||||| Sbjct 5272 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 5213 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| |||||||| | ||| || |||||||||| Sbjct 5212 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 5153 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| || || || Sbjct 5152 ATTCAGAAAGAATCCACCCTCCA 5130 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||||||||| ||||| |||||||| ||| || || | Sbjct 5788 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 5729 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || |||||| Sbjct 5728 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 5669 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || ||||| |||||||| | ||| || ||||| ||| Sbjct 5668 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAAT 5609 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| || || || | || ||||| |||| || || Sbjct 5608 ATCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGG 5562 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || ||||| || ||||| ||||| ||| || || || Sbjct 5560 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 5501 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| ||||||||||| | || |||||| Sbjct 5500 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5441 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | || ||||| || ||||| |||||||| | ||| || |||||||| Sbjct 5440 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 5381 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || || ||||| ||||| || | |||||||| Sbjct 5380 ATCCAAAAAGAATCCACTCTCCATCTTGTGTTACG 5346 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| || || || || || ||||| ||| ||||| | Sbjct 6016 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCG 5957 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | || |||||| |||||||||||| | || |||||| Sbjct 5956 GACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAG 5897 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | || ||||| || |||||||| |||||| | || | | ||||| || Sbjct 5896 CAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAAC 5837 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||||||||| || | || || || |||| || || Sbjct 5836 ATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 5790 >seq1658 Length=21299 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| ||||| || ||||| || ||| ||| |||||| | Sbjct 18091 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 18150 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || |||||| Sbjct 18151 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 18210 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| |||||||| | ||| || |||||||||| Sbjct 18211 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 18270 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| || || || Sbjct 18271 ATTCAGAAAGAATCCACCCTCCA 18293 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || ||||||| || || || ||||||||||| ||| |||||| | Sbjct 17176 AATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATC 17235 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || ||||| || ||||||||| | || |||||| Sbjct 17236 GGACACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 17295 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | |||||||| || || ||| |||| ||| |||| || | |||||||| Sbjct 17296 GCAACGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTACAA 17355 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||| || ||||| | || ||||| Sbjct 17356 CATTCAAAAAGAATCCACCCTTCATCTTGTATTACG 17391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| |||| || ||||| || ||||| ||||| ||| || || || Sbjct 17862 ATGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 17921 Query 29022 GAGACGGTGGCCGATCTTAA--GCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 29079 || || | | || | || || |||| || ||||||||||| | || ||||| Sbjct 17922 GATACAATCGAAAATGTGAAAAGCCAAAA-TTCAAGATAAAGAAGGAATCCCACCAGATC 17980 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 | || || | || ||||| || ||||| |||||||| | ||| || ||||||| Sbjct 17981 AGCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACA 18040 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 | || || || ||||| ||||| || | ||||| || Sbjct 18041 ACATCCAAAAAGAATCCACTCTCCATCTTGTGTTGCG 18077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428327094091430