Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1705 86.0 5e-12 seq1489 86.0 5e-12 seq1658 84.2 2e-11 >seq1705 Length=717327 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || ||||| || ||||| || || ||| || | || |||| |||||| || Sbjct 502397 GTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTCCAACTGTTTACCG 502338 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | | ||||| || || | ||||| ||||| || || |||| Sbjct 502337 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTGAATTTTAGCTTTC 502278 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct 502277 ACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTTGCCGGTCAATGTT 502218 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 502217 TTGACAAAAATTTGCAT 502201 >seq1489 Length=23360 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || ||||| || ||||| || || ||| || | || |||| |||||| || Sbjct 5592 GTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTCCAACTGTTTACCG 5651 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | | ||||| || || | ||||| ||||| || || |||| Sbjct 5652 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTGAATTTTAGCTTTC 5711 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct 5712 ACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTTGCCGGTCAATGTT 5771 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 5772 TTGACAAAAATTTGCAT 5788 >seq1658 Length=21299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| | ||| | |||||| || ||||| ||||| || || || |||| || | || || Sbjct 18072 CACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTC 18013 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 || |||||| || ||| |||| | || |||||| || || | ||||| || || Sbjct 18012 CAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTG 17953 Query 21086 GATCTTTTG--TTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || ||| | |||||| | ||| ||||| ||||| ||||| ||||| || Sbjct 17952 AAT-TTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTT 17894 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || || ||||| ||||||||||| Sbjct 17893 TTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422250420439496