Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1705 116 4e-21 seq1658 100 3e-16 seq1489 100 3e-16 >seq1705 Length=717327 Score = 116 bits (128), Expect = 4e-21 Identities = 384/589 (65%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 || || || ||||| | ||||| ||| |||||| ||||| || || || || |||||| Sbjct 626312 TTTCCAATTCAATATCATGACATTTGGATCATGTATAAAAAAGCTGAAGCATCATTCTGG 626253 Query 116675 ACCGTCGAGGAGGTGGACCT--GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACA 116732 || || || || ||||| || ||| || | | | ||| | | ||||| | | Sbjct 626252 ACAGTTGAAGAAGTGGATCTAAGTCGT--GATATTGCCCATTGGAATCAATTGAATGCAA 626195 Query 116733 ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCA 116792 | || |||||||| | || || |||| ||||| || || ||||| || || |||| Sbjct 626194 ATGAAAAACATTTCATTACACATGTATTGGCATTTTTTGCTGCAAGCGATGGTATTGTCA 626135 Query 116793 ACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCT 116852 | || ||||||| ||| ||||| || || || || | | || || || || || | Sbjct 626134 ATGAAAATCTGGCCGAACGTTTTATTCGTGATGTACAAATACCAGAAGCACGTTGTTTTT 626075 Query 116853 ACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACA 116912 | |||||||| || ||||| || || || || || ||||||||||| | ||| | | Sbjct 626074 ATGGCTTTCAAATTGCCATTGAAAATGTTCATTCAGAAATGTATTCATTATTGATCAATA 626015 Query 116913 CGTACG--TGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCC 116970 | || | | | || | | | | ||| | | | || || ||||| | | || Sbjct 626014 CATATGTATCGGATCGT-AGTGAACAAGAT-TTTCTATTCAATGCCATACGTAATTTACC 625957 Query 116971 GTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGA-GAGGCCGCCT 117029 || || || | || || | ||||| | || |||| | | || || | | | Sbjct 625956 TTGTGTAGAAAAAAAAGCTAAATGGGCTATACGTTGGA-CCCAGGATGATTCAGTTACAT 625898 Query 117030 TCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCG 117089 ||| || || || | || || || ||||| || || |||| ||||| || || | Sbjct 625897 TCGCTGAACGTTTGATTGCATTTGCAGCCGTTGAAGGAATCTTTTTTTCTGGTTCATTTG 625838 Query 117090 CCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGC 117149 |||| || |||||||| || ||||| ||||||||||| || || || || || || Sbjct 625837 CCGCAATTTTTTGGCTTAAAAAACGTGGCCTCATGCCTGGTCTTACATTTTCGAATGAAT 625778 Query 117150 TCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 | || || | || || || | ||||| || ||||| || || |||| Sbjct 625777 TGATTTCACGTGATGAAGGATTACATTGTGATTTTGCATGCTTATTGTT 625729 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||||||||| | || || ||||| |||||| | || || ||| | | Sbjct 502657 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 502716 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||||||| |||||||| || ||||| | || ||| Sbjct 502717 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 502776 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || || ||||| |||| || | || || | ||| |||||| Sbjct 502777 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 502836 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || |||| || ||||| || |||| Sbjct 502837 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCG 502871 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || || |||||||| || | || || ||| | | Sbjct 501744 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 501803 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| |||| | ||||| | || ||||| || ||||| | ||||| Sbjct 501804 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 501863 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || || || |||| || | || || | ||| ||||| Sbjct 501864 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 501923 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| |||| || ||||| || || || Sbjct 501924 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACG 501959 >seq1658 Length=21299 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||||||||| | || || ||||| |||||| | || || ||| | | Sbjct 18091 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 18150 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||||||| |||||||| || ||||| | || ||| Sbjct 18151 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 18210 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || || ||||| |||| || | || || | ||| |||||| Sbjct 18211 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 18270 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || |||| || ||||| || |||| Sbjct 18271 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCG 18305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || | || || ||||| || || | || || || |||| | Sbjct 17862 ATGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGA-GCCATC 17920 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | ||| | || | ||||||| || ||||| || ||||| | || | Sbjct 17921 AGATACAATCGAAAATGTGAAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATC 17980 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| ||| | || | || || |||||| |||| || | || ||| | | || |||| Sbjct 17981 AGCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACA 18040 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || || |||| || ||||| |||||||| Sbjct 18041 ACATCCAAAAAGAATCCACTCTCCATCTTGTGTTGCG 18077 >seq1489 Length=23360 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||||||||| | || || ||||| |||||| | || || ||| | | Sbjct 5332 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 5273 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||||||| |||||||| || ||||| | || ||| Sbjct 5272 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 5213 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || || ||||| |||| || | || || | ||| |||||| Sbjct 5212 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 5153 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || |||| || ||||| || |||| Sbjct 5152 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCG 5118 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || || |||||||| || | || || ||| | | Sbjct 6245 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 6186 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| |||| | ||||| | || ||||| || ||||| | ||||| Sbjct 6185 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 6126 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || || || |||| || | || || | ||| ||||| Sbjct 6125 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 6066 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| |||| || ||||| || || || Sbjct 6065 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACG 6030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208212950560