Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1705 100 2e-16 seq1658 100 2e-16 seq1489 100 2e-16 >seq1705 Length=717327 Score = 100 bits (110), Expect = 2e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| ||||||||||||||| || ||| || ||| || | Sbjct 502864 CAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCA 502805 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||| || || | || | || |||||||| || || || || || |||||| || Sbjct 502804 ATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAA 502745 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | ||| | ||| |||| || | || || || | ||| | ||||| Sbjct 502744 TTTTAGCTTTTACATTTTCAATGGTATCCGATGGT-TCCACTTCCAAGGTGATTGTTTTA 502686 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||||||| || || ||||| Sbjct 502685 CCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| | |||| || || |||||||| ||||||||||| |||| || || ||| Sbjct 502640 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCT 502581 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | |||||| || || | || | ||||||||||| || || || || || || ||| Sbjct 502580 TCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCT 502521 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||| || | ||||| || || | ||| || || | || | ||| Sbjct 502520 TGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTT 502461 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||| || || ||||| ||||| Sbjct 502460 TTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 >seq1658 Length=21299 Score = 100 bits (110), Expect = 2e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| ||||||||||||||| || ||| || ||| || | Sbjct 18298 CAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCA 18239 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||| || || | || | || |||||||| || || || || || |||||| || Sbjct 18238 ATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAA 18179 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | ||| | ||| |||| || | || || || | ||| | ||||| Sbjct 18178 TTTTAGCTTTTACATTTTCAATGGTATCCGATGGT-TCCACTTCCAAGGTGATTGTTTTA 18120 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||||||| || || ||||| Sbjct 18119 CCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | |||| ||||| |||||||| || || ||||| | Sbjct 17862 TACCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCAC 17803 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || | ||| || | ||||| || || | || | ||| || ||||| || | Sbjct 17802 TCAATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTG 17743 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || ||||| ||||| ||| || | ||| | ||| || | ||||| Sbjct 17742 GAATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGA 17683 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||||||||||||| ||||| |||||||| |||||| Sbjct 17682 CTTCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||||||||||||||| || ||| || |||||| | || ||||| Sbjct 17373 GTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCCTCCAATTGCTTTCCG 17314 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | || |||||||| || || || || || |||||| ||||| ||| Sbjct 17313 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTG 17254 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | ||||||| || | || || || | || | ||||| || || | || Sbjct 17253 ACATTTTCAATAGTGTCCGATGGT-TCCACTTCCAATGTAATGGTTTTACCAGTTAAGGT 17195 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| |||||||| ||||| Sbjct 17194 TTTGACAAAAATTTGCAT 17177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | |||| || || |||||||| ||||||||||| | Sbjct 18091 TACCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAC 18032 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || || ||| || | |||||| || || | || | ||||||||||| || | Sbjct 18031 TCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTG 17972 Query 118630 GTATGCCCTCCTTGTCTGTAATTTT-TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 | || || || || ||| |||||| ||| || | ||||| || || | ||| Sbjct 17971 GGATTCCTTCTTTATCTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCA 17912 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || |||| ||| || || || || ||||| Sbjct 17911 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||| | ||| ||||| || | |||||| ||||||||||| ||||||||| | Sbjct 17175 CCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGGAC 17116 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || | ||||| ||||| |||| | ||| |||||||| || || Sbjct 17115 AAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTGGA 17056 Query 118632 ATGCC 118636 || || Sbjct 17055 ATACC 17051 >seq1489 Length=23360 Score = 100 bits (110), Expect = 2e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| ||||||||||||||| || ||| || ||| || | Sbjct 5125 CAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCA 5184 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||| || || | || | || |||||||| || || || || || |||||| || Sbjct 5185 ATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAA 5244 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | ||| | ||| |||| || | || || || | ||| | ||||| Sbjct 5245 TTTTAGCTTTTACATTTTCAATGGTATCCGATGGT-TCCACTTCCAAGGTGATTGTTTTA 5303 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||||||| || || ||||| Sbjct 5304 CCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| | |||| || || |||||||| ||||||||||| |||| || || ||| Sbjct 5349 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCT 5408 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | |||||| || || | || | ||||||||||| || || || || || || ||| Sbjct 5409 TCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCT 5468 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||| || | ||||| || || | ||| || || | || | ||| Sbjct 5469 TGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTT 5528 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||| || || ||||| ||||| Sbjct 5529 TTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821379852552