Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1705 113 7e-20 seq1489 113 7e-20 seq1658 111 2e-19 >seq1705 Length=717327 Score = 113 bits (124), Expect = 7e-20 Identities = 104/129 (81%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | || | ||||||||||| || |||||||| ||| || ||||||||||| Sbjct 501745 TTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGA-ATATTATAATCG 501687 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | ||||| | ||| ||||||||||| |||||||| ||||| | ||||||||| || Sbjct 501686 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 501627 Query 146168 GGAATTCCT 146176 ||||| ||| Sbjct 501626 GGAATACCT 501618 Score = 113 bits (124), Expect = 7e-20 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| |||||| | ||| | || ||||| || || || ||||| || Sbjct 501971 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 501912 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || ||||| ||||||||||| ||||||| |||||| || || || Sbjct 501911 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 501852 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| || || ||| ||| Sbjct 501851 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACT 501792 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || | ||| || |||||||| || |||||||| | ||| ||||||||| Sbjct 501791 TCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||||| | ||| | ||| | || |||||||| || || ||||| | Sbjct 502885 TTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGG 502826 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | || ||| || |||||||| || ||||||||||| | ||||||||| || | Sbjct 502825 ACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTG 502766 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||| ||||| ||||| || ||| | Sbjct 502765 GGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCA 502706 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | |||||||||||||| || || ||||| | |||||||||||| Sbjct 502705 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||||||| || || |||||||| || |||||||| || Sbjct 501443 CCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 501384 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || ||||||||||||||||| ||||||||||||||||| || ||| Sbjct 501383 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 501324 Query 146171 ATTCCT 146176 || ||| Sbjct 501323 ATACCT 501318 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | ||| | |||||||||||| || |||||||| || | || | || ||| Sbjct 502184 AAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCT 502125 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||||||||||| ||||||||| || || || |||||||||||| Sbjct 502124 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCT 502065 Query 146186 TG 146187 || Sbjct 502064 TG 502063 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || | ||| | ||| |||||||| || || ||||| Sbjct 502655 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 502596 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||| || ||| || || ||||| || ||||||||||||| |||||||| || || Sbjct 502595 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 502536 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||||| || ||| Sbjct 502535 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 502476 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||| ||||||||||| || || || || | ||| |||||||| Sbjct 502475 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 >seq1489 Length=23360 Score = 113 bits (124), Expect = 7e-20 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| |||||| | ||| | || ||||| || || || ||||| || Sbjct 6018 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 6077 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || ||||| ||||||||||| ||||||| |||||| || || || Sbjct 6078 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 6137 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| || || ||| ||| Sbjct 6138 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACT 6197 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || | ||| || |||||||| || |||||||| | ||| ||||||||| Sbjct 6198 TCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 113 bits (124), Expect = 7e-20 Identities = 104/129 (81%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCT 146107 ||||||| | || | ||||||||||| || ||||||| |||| || ||||||||||| Sbjct 6244 TTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGA-ATATTATAATCG 6302 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | ||||| | ||| ||||||||||| |||||||| ||||| | ||||||||| || Sbjct 6303 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 6362 Query 146168 GGAATTCCT 146176 ||||| ||| Sbjct 6363 GGAATACCT 6371 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||||| | ||| | ||| | || |||||||| || || ||||| | Sbjct 5104 TTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGG 5163 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | || ||| || |||||||| || ||||||||||| | ||||||||| || | Sbjct 5164 ACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTG 5223 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||| ||||| ||||| || ||| | Sbjct 5224 GGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCA 5283 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | |||||||||||||| || || ||||| | |||||||||||| Sbjct 5284 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||||||| || || |||||||| || |||||||| || Sbjct 6546 CCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 6605 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || ||||||||||||||||| ||||||||||||||||| || ||| Sbjct 6606 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 6665 Query 146171 ATTCCT 146176 || ||| Sbjct 6666 ATACCT 6671 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | ||| | |||||||||||| || |||||||| || | || | || ||| Sbjct 5805 AAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCT 5864 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||||||||||| ||||||||| || || || |||||||||||| Sbjct 5865 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCT 5924 Query 146186 TG 146187 || Sbjct 5925 TG 5926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || | ||| | ||| |||||||| || || ||||| Sbjct 5334 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 5393 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||| || ||| || || ||||| || ||||||||||||| |||||||| || || Sbjct 5394 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 5453 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||||| || ||| Sbjct 5454 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 5513 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||| ||||||||||| || || || || | ||| |||||||| Sbjct 5514 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 >seq1658 Length=21299 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||||| | ||| | ||| | || |||||||| || || ||||| | Sbjct 18319 TTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGG 18260 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | || ||| || |||||||| || ||||||||||| | ||||||||| || | Sbjct 18259 ACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTG 18200 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||| ||||| ||||| || ||| | Sbjct 18199 GGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCA 18140 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | |||||||||||||| || || ||||| | |||||||||||| Sbjct 18139 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 109 bits (120), Expect = 8e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | ||||||||||| || ||||||||||| ||||| ||||| | Sbjct 17177 TTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGG 17118 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||||| | ||| ||||||||||| |||||||| ||||| | ||||||||| || | Sbjct 17117 ACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTG 17058 Query 146169 GAATTCCT 146176 |||| ||| Sbjct 17057 GAATACCT 17050 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | ||| | |||||||||||| ||||||||||| Sbjct 17860 CCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTC 17801 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| || |||||||| || ||||||||||| | ||| ||||| || ||| Sbjct 17800 AATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 17741 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 17740 ATTCCTTCTTTGTCCTG 17724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||| || || |||||||| || |||||||| || | || | || ||| || Sbjct 16858 TACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGACAATGTACGGCCATCTTC 16799 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 ||||||||||||||||| ||||||| ||||||||| || ||||| ||| Sbjct 16798 CAATTGTTTTCCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCT 16750 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | ||| || | ||| | ||| ||||| || || ||||| || || Sbjct 17632 CCACCACGTAGACGTAAGACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGAT 17573 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | |||||| |||||||||||||||| ||||||||| || ||| Sbjct 17572 AATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGA 17513 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||||||||| Sbjct 17512 ATACCCTCTTTATCTTG 17496 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/228 (67%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | ||| | ||| |||||||| || || ||||| Sbjct 18089 CCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 18030 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||| || ||| || || ||||| || ||||||||||||| |||||||| || || Sbjct 18029 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 17970 Query 146171 ATTCCTTCTTTATCTTG-NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||||||||||| |||||||| || || Sbjct 17969 ATTCCTTCTTTATCTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAAC 17910 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| | ||| ||||||||||| || || || || | |||||||||||| Sbjct 17909 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743510544299520