Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1705 369 3e-97 >seq1705 Length=717327 Score = 369 bits (408), Expect = 3e-97 Identities = 619/882 (70%), Gaps = 14/882 (2%) Strand=Plus/Plus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 ||||||||||||| ||| | ||||| || ||||||| ||| ||||| |||||||| | Sbjct 625445 TTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTCCAATGAAATTT 625504 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACA 16061 ||||||||| ||||| ||||| | ||| | ||| || || |||||| | || Sbjct 625505 GTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAATTCAATTCTACCA 625564 Query 16062 ATAATCTATCCGCCACAA-ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 |||| | ||| || |||| |||| ||||| | |||||| | | ||||| || || Sbjct 625565 ATAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGAATTCATGCCAATC 625623 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 ||| ||| || | ||| || || || || | | ||| || || || || || || Sbjct 625624 AATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACAGCATCGATAATA 625683 Query 16181 ATATCTCTTACTACACTATT-TAACGGAGGGTTT--AATAAGTGTTTAAACATTATACAA 16237 ||||| | | | | | | | ||| | || |||| || | ||||| || || Sbjct 625684 ATATCAACAATT-CGTTGTGGTGATGGACGATTACGAATA--TGGTGAAACAATAAGCAT 625740 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 |||||||||||||| |||||||| || | || || || || |||||||||||||| Sbjct 625741 GCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAAAATGTAAGACCA 625800 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| || || |||||||||| |||||| || |||||||||||||||||||| || || Sbjct 625801 GGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCAGAAAAAAAGATT 625860 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT-TCT-Atttttactttcta 16415 |||||||| || |||||||||| ||| || ||| || | || || | | | | | Sbjct 625861 CCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAATCATCC--TGGG 625918 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 |||| | ||||||| || ||||||| || ||||| | || ||| ||||| | Sbjct 625919 TCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACGTATGGCATTGA 625978 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 ||| | ||| || ||| | | ||| | | ||| |||| || | ||| |||||||| Sbjct 625979 ATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAATAATGAATACATTT 626038 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 ||||||||| ||| || || || || ||||| |||||||| || | ||||| | ||||| Sbjct 626039 CTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTGCTTCTGGTATTT 626098 Query 16596 GTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 |||| ||| || ||||| | ||| || | ||||| || || || |||||||| || ||| Sbjct 626099 GTACATCACGAATAAAA-CGTTCGGCCAGATTTTCATTGACAATACCATCGCTTGCAGCA 626157 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 ||||| || | || ||| |||| |||| |||||| || | | || ||| | Sbjct 626158 AAAAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTCAATTGATTCCAATGG 626217 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 | || ||| || ||| || ||||| || ||||| || || || |||| |||||| Sbjct 626218 GCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGATGCTTCAGCTTTTTTA 626277 Query 16775 TACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 ||||| |||| ||||| | || ||| ||||||| |||| Sbjct 626278 TACATGATCCAAATGTCATGATATTGAATTGGAAACAAAACA 626319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502136931600