Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq206 194 1e-44 >seq206 Length=237414 Score = 194 bits (214), Expect = 1e-44 Identities = 338/488 (69%), Gaps = 3/488 (1%) Strand=Plus/Minus Query 19897 AATCGTTATAACATAAAACATTCCGAATATCAATACTTGGAGCAAGTTAATTTTATTTTA 19956 ||||| || || || ||||| |||||||||||| | || | | | || | | | Sbjct 142352 AATCGATAAAAAATGAAACACGACGAATATCAATATCTTGATCTAATCAAACATGTCCTT 142293 Query 19957 CACAATGGTGTACAAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATG 20016 | ||||||| |||||| || || || |||||||| || || || || ||||| | Sbjct 142292 GATAATGGTGCCGAAAAAAATGACCGTACAGGAACTGGTACATTTTCGGTGTTTGGTACA 142233 Query 20017 CAATCTCGATATA-ACTT-GAGAAATGA-ATTTCCCTTATTAACTACGAAACGGGTATTT 20073 ||| ||| ||| |||| | || | ||| || || | ||||| ||||| |||||| Sbjct 142232 CAAAGTCGTTATTCACTTCGTGATCAAACATTACCATTGATCACTACAAAACGTGTATTT 142173 Query 20074 TGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAG 20133 ||| || ||||| |||||| | |||||||| | |||||||||| | || | || Sbjct 142172 TGGCGTGGTGTTGTCGAAGAGCTTCTATGGTTTCTACAAGGATCAACTGACTCGAAAAAG 142113 Query 20134 CTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGC 20193 || |||||||| || || || ||| ||| ||||||| ||||| | | ||| Sbjct 142112 CTGTCTGAAAAAGGTGTAAAAATCTGGGATGCAAATGGATCACGAGAATTTCTCGATAGC 142053 Query 20194 AATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGA 20253 ||| |||| | | |||||||| || ||| | ||||| || ||||| |||||||||||| Sbjct 142052 CTTGGGTTTGCCGATCGTCAAGAAGGTGATCTAGGTCCAGTATATGGTTTTCAATGGAGA 141993 Query 20254 CATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAA 20313 |||||||| || |||||| |||| || | ||||| || ||||| || |||||| Sbjct 141992 CATTTTGGTGCCGAATATCGAGACAAAAATTCCGATTATAATGCTCAAGGTGTTGATCAA 141933 Query 20314 TTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGC 20373 ||| || | |||| || || ||||| || || || || | |||| ||| ||| Sbjct 141932 TTAAAACAGCTTATCCATACGATCAAAACAAATCCGAATGATCGTCGAATGATTATATCG 141873 Query 20374 GCCTGGAA 20381 || ||||| Sbjct 141872 GCTTGGAA 141865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399175700216170