Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1705 340 2e-88 >seq1705 Length=717327 Score = 340 bits (376), Expect = 2e-88 Identities = 621/899 (69%), Gaps = 18/899 (2%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || || ||||||||||||| ||| | |||||| || || || | ||||||| Sbjct 625432 GACATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCT 625491 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||| ||| || | ||||||||| ||||||||||| | | || | ||| |||||| Sbjct 625492 TCCAATGAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAA 625551 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 | ||||| | ||| | ||| ||| | |||||||| | |||||||| | || Sbjct 625552 TTCAATTCTACCAATAAACGATCTGCACAATATTCAATATAATCGGACATTAATTTTGAA 625611 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || | | || || | | || ||| || ||||| | ||| || || ||| Sbjct 625612 TTCATGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACA 625671 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATT----AGAAGGAGGATATTTTAGATGTTT 14193 || ||| |||||||| || || ||| || || ||| ||| | ||| | Sbjct 625672 GCATCG---ATAATAATATCAACAA-TTCGTTGTGGTGATGGACGATTACGAATATGGTG 625727 Query 14194 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 14253 ||| | ||| || |||||||||||||| | || ||||| | ||| | ||| || || Sbjct 625728 AAACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGA 625787 Query 14254 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 14313 |||||| | || ||||| | || |||||||| | |||||| ||||| || ||||| || Sbjct 625788 AAATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACC 625847 Query 14314 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14373 ||||| || ||||| ||||| || ||||| || || || ||||| | || | || Sbjct 625848 AGAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGA 625907 Query 14374 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttt-tA-ATAAAATCCATTGTT 14431 | | | |||| | ||||||||| || |||||||| || | || | ||| Sbjct 625908 ATCATCCTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACG 625967 Query 14432 TCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14491 | || ||||| |||| | || | || || | || | ||||||| || | | Sbjct 625968 T--ATGGCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAAT 626025 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 || ||||||||| || || | ||||| || || || ||||| ||||||||||| | Sbjct 626026 AATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGT 626085 Query 14552 GCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14610 ||||||| |||||| || || ||||| | |||||||| ||||||||| || ||||| Sbjct 626086 GCTTCTGGTATTTGTACATCACGAATAAAA-CGTTCGGCCAGATTTTCATTGACAATACC 626144 Query 14611 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC--TG 14668 ||| || || |||||||||||||||| | | |||| || | || || | |||| | Sbjct 626145 ATCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCAT--TTGCATTC 626202 Query 14669 AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 | || ||||||| ||| | ||| | ||||| ||||| ||||||||||| || Sbjct 626203 AATTGATTCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGAT 626262 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 || |||||||||||||||| | ||| || || | |||| || ||||| | ||||| Sbjct 626263 GCTTCAGCTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAACAAAACAAA 626321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335313980080