Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1705 113 3e-20 seq1489 113 3e-20 seq1658 104 2e-17 >seq1705 Length=717327 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| | ||| | ||||| || ||||| ||||| |||||||| |||| | Sbjct 501971 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 501912 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| |||||||| || || ||| |||| | || ||| || || || Sbjct 501911 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 501852 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| |||| | |||| ||| | | ||| ||||||| || || Sbjct 501851 ATACCTTCTTTATCTTGGATTT-TAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCAC 501793 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| |||| || ||||||||||| || |||||||||||| Sbjct 501792 TTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 100 bits (110), Expect = 2e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 18079 ATACATTTTC-TTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCT 18137 || |||| || ||||| | ||| || || |||| ||||| | || || || |||||| Sbjct 502904 ATCCATTATCATTTTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCT 502845 Query 18138 TTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATA 18197 || ||||||||||| |||| || || | ||||||||||||||| || ||| | || Sbjct 502844 TTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATC 502785 Query 18198 AGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGC 18256 | | ||| ||||| || | ||||| || || ||||| | || || || | | | Sbjct 502784 AACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTT-TAGCTTTTACATTTTC 502726 Query 18257 AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAA 18316 || || || || || ||| | |||||| |||| || ||||| |||||||| || Sbjct 502725 AATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAA 502666 Query 18317 AATTTGCAT 18325 |||||||| Sbjct 502665 TATTTGCAT 502657 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 || || ||||| | |||| || | || || || ||||||||||| || || || || Sbjct 502427 CCACCACGTAGACGTAAG-ACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACT 502369 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || |||| | ||||||||| ||||| || ||| |||| | | ||| ||||| || Sbjct 502368 CAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGG 502309 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | |||| || | | ||| || || |||||| Sbjct 502308 GATACCTTCTTTGTCCTGAATTT-TAGCTTTCACATTTTCAATGGTATCGGATGGCTCGA 502250 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | ||||||||||||||||| |||||||||||||| Sbjct 502249 CTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||||| || | ||| ||||||||||||||||| || |||| | Sbjct 501443 CCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 501384 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| | ||||||||||||||| || ||| |||| | |||||| ||||| Sbjct 501383 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATC 501331 >seq1489 Length=23360 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| | ||| | ||||| || ||||| ||||| |||||||| |||| | Sbjct 6018 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 6077 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| |||||||| || || ||| |||| | || ||| || || || Sbjct 6078 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 6137 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| |||| | |||| ||| | | ||| ||||||| || || Sbjct 6138 ATACCTTCTTTATCTTGGATTT-TAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCAC 6196 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| |||| || ||||||||||| || |||||||||||| Sbjct 6197 TTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 100 bits (110), Expect = 2e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 18079 ATACATTTTC-TTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCT 18137 || |||| || ||||| | ||| || || |||| ||||| | || || || |||||| Sbjct 5085 ATCCATTATCATTTTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCT 5144 Query 18138 TTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATA 18197 || ||||||||||| |||| || || | ||||||||||||||| || ||| | || Sbjct 5145 TTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATC 5204 Query 18198 AGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGC 18256 | | ||| ||||| || | ||||| || || ||||| | || || || | | | Sbjct 5205 AACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTT-TAGCTTTTACATTTTC 5263 Query 18257 AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAA 18316 || || || || || ||| | |||||| |||| || ||||| |||||||| || Sbjct 5264 AATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAA 5323 Query 18317 AATTTGCAT 18325 |||||||| Sbjct 5324 TATTTGCAT 5332 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 || || ||||| | |||| || | || || || ||||||||||| || || || || Sbjct 5562 CCACCACGTAGACGTAAG-ACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACT 5620 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || |||| | ||||||||| ||||| || ||| |||| | | ||| ||||| || Sbjct 5621 CAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGG 5680 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | |||| || | | ||| || || |||||| Sbjct 5681 GATACCTTCTTTGTCCTGAATTT-TAGCTTTCACATTTTCAATGGTATCGGATGGCTCGA 5739 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | ||||||||||||||||| |||||||||||||| Sbjct 5740 CTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||||| || | ||| ||||||||||||||||| || |||| | Sbjct 6546 CCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 6605 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| | ||||||||||||||| || ||| |||| | |||||| ||||| Sbjct 6606 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATC 6658 >seq1658 Length=21299 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||||||||| || || || || || |||| | | ||||||||||||| Sbjct 17836 TGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCTTCCAATTGT 17777 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || | | ||||||||| || | ||||| || || |||| | Sbjct 17776 TTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGGATTT-T 17718 Query 18243 TGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||| || | | ||| || || |||||| ||| | || ||| |||||||||| Sbjct 17717 AGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTTTTGCCGGT 17658 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||||||||| |||||||||||||| Sbjct 17657 CAATGTTTTGACAAAAATTTGCAT 17634 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||||||||||||||| || | || ||| || ||| |||||||| Sbjct 17379 TGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCCTCCAATTGC 17320 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | | ||| ||||| || | ||||| || || |||| | Sbjct 17319 TTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATTT-T 17261 Query 18243 TGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||| ||| | | ||| |||||| || || ||| | || ||| |||| || || Sbjct 17260 AGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGTTTTACCAGT 17201 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 || ||||| ||||||||||||||| Sbjct 17200 TAAGGTTTTGACAAAAATTTGCATT 17176 Score = 100 bits (110), Expect = 2e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 18079 ATACATTTTC-TTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCT 18137 || |||| || ||||| | ||| || || |||| ||||| | || || || |||||| Sbjct 18338 ATCCATTATCATTTTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCT 18279 Query 18138 TTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATA 18197 || ||||||||||| |||| || || | ||||||||||||||| || ||| | || Sbjct 18278 TTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATC 18219 Query 18198 AGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGC 18256 | | ||| ||||| || | ||||| || || ||||| | || || || | | | Sbjct 18218 AACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTT-TAGCTTTTACATTTTC 18160 Query 18257 AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAA 18316 || || || || || ||| | |||||| |||| || ||||| |||||||| || Sbjct 18159 AATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAA 18100 Query 18317 AATTTGCAT 18325 |||||||| Sbjct 18099 TATTTGCAT 18091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | |||||||| || | ||| ||||||||||||||||| || |||| | Sbjct 16875 CCTCCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 16816 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| | ||||||||||||||| || ||| |||| | || ||| ||||| Sbjct 16815 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGCTGATC 16763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || ||||| | | ||||| || | ||| |||||||||||||| ||||| |||| Sbjct 17176 TCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGGA 17117 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || ||| || |||||| ||||||||||| ||| |||| | | ||| ||||| Sbjct 17116 CAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATC 17063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336112726970