Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1658 89.7 4e-13 seq1705 86.0 5e-12 seq1489 86.0 5e-12 >seq1658 Length=21299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||||||||| || ||||| || || | || || ||| | Sbjct 17177 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATCG 17236 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| ||| || | ||||| | |||||||| | || || ||| Sbjct 17237 GACACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAG 17296 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 ||||| || || | ||| || || ||| |||| ||| || | ||| || ||||||| Sbjct 17297 CAACGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGA--ACTTTGTCTGATTACA 17354 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| || ||||| |||| |||||| | || ||||| | || || ||| Sbjct 17355 ACATTCAAAAAGAATCCACCCTTCATCTTGTATTACGGCTTCGTGGTGGT 17404 >seq1705 Length=717327 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||| || || || ||||| || || | || || ||| | Sbjct 501745 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCT 501804 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| ||| || | ||||| | |||||||| | || |||||| Sbjct 501805 GACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAG 501864 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 ||||| || || | ||| || || ||| |||| ||| || | ||| || |||||||| Sbjct 501865 CAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGA--ACTTTGTCCGATTACA 501922 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| || || || |||| |||||| | || |||||| | || || ||| Sbjct 501923 ACATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGGT 501972 >seq1489 Length=23360 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||| || || || ||||| || || | || || ||| | Sbjct 6244 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCT 6185 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| ||| || | ||||| | |||||||| | || |||||| Sbjct 6184 GACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAG 6125 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 ||||| || || | ||| || || ||| |||| ||| || | ||| || |||||||| Sbjct 6124 CAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGA--ACTTTGTCCGATTACA 6067 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| || || || |||| |||||| | || |||||| | || || ||| Sbjct 6066 ACATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGGT 6017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418295302675520