Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1705 123 5e-23 >seq1705 Length=717327 Score = 123 bits (136), Expect = 5e-23 Identities = 292/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| ||||| || |||||||||||||| ||| |||| |||| || | ||||| ||| Sbjct 625882 TTGCATTTGCAGCCGTTGAAGGAATCTTTTTTTCTGGTTCATTTGCCGCAATTTTTTGGC 625823 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | || || | || | |||||||||| || | || ||||| || ||||| | || | Sbjct 625822 TTAAAAAACGTGGCCTCATGCCTGGTCTTACATTTTCGAATGAATTGATTTCACGTGATG 625763 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 |||| | ||| | || ||||||||| | |||| | | | || | || |||| Sbjct 625762 AAGGATTACATTGTGATTTTGCATGCTTATTGTTTCACCA---TATTCGTAATCGTCCAT 625706 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 || | || | ||| |||| ||| | | || || || |||||||| ||||| | | Sbjct 625705 CACCACAACGAATTGTTGATATTATTATCGATGCTGTATCGATTGAACAGGAATTCTTGA 625646 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | | | | | || ||| ||| | || ||||| | || || ||| | | || |||| Sbjct 625645 CCGATGCATTACCAGTTTCATTGATTGGCATGAATTCAAAATTAATGTCCGATTATATTG 625586 Query 102219 AAT-TTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACC 102277 ||| |||| |||||| ||||||| ||| || ||||| || ||||| || Sbjct 625585 AATATTGT-GCAGATCGTTTATTGGTAGAATTGAATTGTGAAAAACATTATAAAACGGCC 625527 Query 102278 AACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAG 102337 || || || ||| ||||| | ||||| | || ||| | || ||||| ||||| Sbjct 625526 AATCCATTTGAATTTATGGAACAAATTTCATTGGAAGGTAAATCAAATTTTTTCGAAAAA 625467 Query 102338 AGAGTCGCCGAGTATCAA 102355 | || ||||| |||||| Sbjct 625466 CGTGTTGCCGAATATCAA 625449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562369549230