Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1705 334 7e-87 >seq1705 Length=717327 Score = 334 bits (370), Expect = 7e-87 Identities = 620/899 (69%), Gaps = 18/899 (2%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || || ||||||||||||| ||| | |||||| || || || | ||||||| Sbjct 625432 GACATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCT 625491 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||| ||| || | ||||||||| ||||||||||| | || | ||| |||||| Sbjct 625492 TCCAATGAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAA 625551 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 | ||||| | ||| | ||| ||| | | |||||||| | |||||||| | || Sbjct 625552 TTCAATTCTACCAATAAACGATCTGCACAATATTCAATATAATCGGACATTAATTTTGAA 625611 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || | | || || | | || ||| || ||||| | ||| || || ||| Sbjct 625612 TTCATGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACA 625671 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTA----GAAGGAGGATATTTTAGATGTTT 13861 || || |||||||| || ||| || || || ||| ||| | ||| | Sbjct 625672 GCATCG---ATAATAATATCAACAAT-TCGTTGTGGTGATGGACGATTACGAATATGGTG 625727 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 ||| | ||| || |||||||||||||| | || ||||| | ||| | ||| || || Sbjct 625728 AAACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGA 625787 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 |||||| | || ||||| | || |||||||| | |||||| ||||| |||||||| || Sbjct 625788 AAATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACC 625847 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||||| || ||||| ||||| || ||||| || || || ||||| | || | || Sbjct 625848 AGAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGA 625907 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttt-tA-ATAAAATCCATTGTT 14099 | | | |||| | ||||||||| || |||||||| || | || | ||| Sbjct 625908 ATCATCCTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACG 625967 Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 | || ||||| |||| | | || | || || | || | ||||||| || | | Sbjct 625968 T--ATGGCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAAT 626025 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 || ||||||||| || || | ||||| || || || ||||| |||||||| || | Sbjct 626026 AATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGT 626085 Query 14220 GCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 ||||| | |||||| || ||| ||||| | |||||||| ||||||||| || ||||| Sbjct 626086 GCTTCTGGTATTTGTACATCACGAATAAAA-CGTTCGGCCAGATTTTCATTGACAATACC 626144 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG--TTG 14336 ||| || || |||||||||||||||| | | |||| || | || || | ||| || Sbjct 626145 ATCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCAT--TTGCATTC 626202 Query 14337 AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 | || ||||||| || | ||| | ||||| ||||| ||||||||||| || Sbjct 626203 AATTGATTCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGAT 626262 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 || |||||||||||||||| | ||| || || | |||| || ||||| | ||||| Sbjct 626263 GCTTCAGCTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAACAAAACAAA 626321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717769800400