Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1705 345 4e-90 >seq1705 Length=717327 Score = 345 bits (382), Expect = 4e-90 Identities = 621/898 (69%), Gaps = 16/898 (2%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || || ||||||||||||| ||| | |||||| ||||| || | ||||||| Sbjct 625432 GACATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCT 625491 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||| ||| || | ||||||||| || |||||||| | | || | ||| |||||| Sbjct 625492 TCCAATGAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAA 625551 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 | ||||| ||||| | ||| ||| | | |||||||| | |||||||| | || Sbjct 625552 TTCAATTCTACCAATAAACGATCTGCACAATATTCAATATAATCGGACATTAATTTTGAA 625611 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || | | || || | | || || || ||||| | ||| || || ||| Sbjct 625612 TTCATGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACA 625671 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATT----AGAAGGAGGATATTTTAGATGTTT 13649 || ||| |||||||| | || ||| || || || ||| ||| | ||| | Sbjct 625672 GCATCG---ATAATAATATCAACAAT-TCGTTGTGGTGATGGACGATTACGAATATGGTG 625727 Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709 ||| | ||| || |||||||||||||| | || ||||| | ||| | ||| || || Sbjct 625728 AAACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGA 625787 Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769 |||||| | || ||||| | || |||||||| | |||||| ||||| || ||||| || Sbjct 625788 AAATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACC 625847 Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT 13829 ||||| || ||||| ||||| || ||||| || || | ||||| | || | || Sbjct 625848 AGAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGA 625907 Query 13830 TTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 13889 | | |||| | ||||||||| || |||||||| | | || | || | Sbjct 625908 ATCATCCTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTA-AATTAC 625966 Query 13890 G-ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 13948 | || |||||||||| | || | || || | || | ||||||| || | || Sbjct 625967 GTATGGCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAATA 626026 Query 13949 AGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG 14008 | ||||||||| || || | ||||| || || || ||||| ||||||||||| | | Sbjct 626027 ATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTG 626086 Query 14009 CTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 |||||| |||||| || ||| ||||| | ||| |||| |||||||| ||||||||| Sbjct 626087 CTTCTGGTATTTGTACATCACGAATAAAA-CGTTCGGCCAGATTTTCATTGACAATACCA 626145 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG--TTGA 14125 || || || |||||||||||||||| | | |||| || | || || | ||| || | Sbjct 626146 TCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCAT--TTGCATTCA 626203 Query 14126 GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 || ||||||| ||| | ||| | ||||| ||||| ||||||||||| || | Sbjct 626204 ATTGATTCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGATG 626263 Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 | |||||||||||||||| | ||| || || | |||| || ||||| | ||||| Sbjct 626264 CTTCAGCTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAACAAAACAAA 626321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578594093840