Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1705 143 2e-29 seq1658 143 2e-29 seq1489 143 2e-29 >seq1705 Length=717327 Score = 143 bits (158), Expect = 2e-29 Identities = 159/207 (77%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||||||| | | | | | ||||| ||||| Sbjct 502860 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTG 502801 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || || | ||||| ||||| || || ||| || ||||||||||| |||||| Sbjct 502800 TTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 502741 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| |||||| |||| |||||||| | || ||| || || ||||| || |||||||| Sbjct 502740 AGCT-TTTACATTTTCAATGGTATC-CGATGGTTCCACTTCCAAGGTGATTGTTTTACCA 502683 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||||||||| || ||||||||| Sbjct 502682 GTCAAAGTTTTTACGAATATTTGCATA 502656 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | || ||| || | |||||||||||| || ||||| |||||||||||| Sbjct 501971 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 501912 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | || || ||||| || ||||| | ||||| ||||| ||||| ||| Sbjct 501911 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 501852 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| || ||| |||| || || || ||| || Sbjct 501851 ATACCTTCTTTATCTTGGATTTTAGCT-TTGACATTTTCAATAGTGTCAGATGGTTCCAC 501793 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| |||| ||||| || ||||||||||| Sbjct 501792 TTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 Score = 129 bits (142), Expect = 4e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || | ||| |||||||| |||||||| || || ||||| || | ||| | || Sbjct 502413 TAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATC 502354 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || ||||| || || | ||||| ||||| || || ||| || ||||||||||| Sbjct 502353 TTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTC 502294 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 |||||| ||| || ||| |||| ||||||||| || || || || ||||||| Sbjct 502293 CTGAATTTTAGCT-TTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGG 502235 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||| ||||| ||||||||||||||| Sbjct 502234 TCTTGCCGGTCAATGTTTTGACAAAAATTTGCATA 502200 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || | ||| || ||||| |||||||| ||||||||||| || | ||| | || Sbjct 502641 TAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATC 502582 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || ||||| || || | ||||| || || || || ||| ||||||||||| || Sbjct 502581 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 502522 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||||| || ||| |||| || ||||| || || || || ||||| || Sbjct 502521 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 502462 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| |||| ||| || || |||||||||||| Sbjct 502461 TTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 502428 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || || || |||||||| ||||| ||||| || | | | ||| Sbjct 502184 AAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCT 502125 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | ||||| ||||| || || ||| || |||||||| || Sbjct 502124 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCT 502065 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGG 15329 ||||| ||| || ||| |||| || || || | || ||| || || || ||||| | Sbjct 502064 TGGATTTTTGCT-TTCACATTTTCAATCGTGTC-CGATGGTTCGACTTCCAATGTAATAG 502007 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || | ||||| ||||||||||||||| Sbjct 502006 TCTTACCAGTTAAGGTTTTGACAAAAATTTGCATA 501972 >seq1658 Length=21299 Score = 143 bits (158), Expect = 2e-29 Identities = 159/207 (77%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||||||| | | | | | ||||| ||||| Sbjct 18294 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTG 18235 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || || | ||||| ||||| || || ||| || ||||||||||| |||||| Sbjct 18234 TTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 18175 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| |||||| |||| |||||||| | || ||| || || ||||| || |||||||| Sbjct 18174 AGCT-TTTACATTTTCAATGGTATC-CGATGGTTCCACTTCCAAGGTGATTGTTTTACCA 18117 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||||||||| || ||||||||| Sbjct 18116 GTCAAAGTTTTTACGAATATTTGCATA 18090 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || || || |||||||| || || ||||| || | |||| | ||| Sbjct 17845 AACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCT 17786 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | |||||||||||||| || |||||||||||||||||| Sbjct 17785 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCC 17726 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||| || || |||| |||||||| || || || || |||||||| Sbjct 17725 TGGATTTTAGCT-TTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGT 17667 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| ||||| |||||||||||||| Sbjct 17666 TTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 125 bits (138), Expect = 5e-24 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || | |||||||||||| |||||||| ||||||||||| | | ||| | || Sbjct 17389 TAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATC 17330 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 || ||||| || || || | ||||| ||||| || || ||| || ||||||||||| Sbjct 17329 CTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTC 17270 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATG 15328 ||||| ||| || ||| |||| || || || | || ||| || || || |||||| Sbjct 17269 TTGGATTTTAGCT-TTGACATTTTCAATAGTGTC-CGATGGTTCCACTTCCAATGTAATG 17212 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || | ||||| |||||||||||||| Sbjct 17211 GTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 116 bits (128), Expect = 3e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || ||||| |||||||| ||||||||||| || | ||| | ||| Sbjct 18074 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCT 18015 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || ||||| || || | ||||| || || || || ||| ||||||||||| || Sbjct 18014 TCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCT 17955 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || ||| |||| || ||||| || || || || ||||| || Sbjct 17954 TGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 17895 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| |||| ||| || || || ||||||||| Sbjct 17894 TTTACCAGTCAAAGTCTTGACGAATATTTGCATA 17861 >seq1489 Length=23360 Score = 143 bits (158), Expect = 2e-29 Identities = 159/207 (77%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||||||| | | | | | ||||| ||||| Sbjct 5129 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTG 5188 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || || | ||||| ||||| || || ||| || ||||||||||| |||||| Sbjct 5189 TTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 5248 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| |||||| |||| |||||||| | || ||| || || ||||| || |||||||| Sbjct 5249 AGCT-TTTACATTTTCAATGGTATC-CGATGGTTCCACTTCCAAGGTGATTGTTTTACCA 5306 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||||||||| || ||||||||| Sbjct 5307 GTCAAAGTTTTTACGAATATTTGCATA 5333 Score = 129 bits (142), Expect = 4e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || | ||| |||||||| |||||||| || || ||||| || | ||| | || Sbjct 5576 TAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATC 5635 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || ||||| || || | ||||| ||||| || || ||| || ||||||||||| Sbjct 5636 TTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTC 5695 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 |||||| ||| || ||| |||| ||||||||| || || || || ||||||| Sbjct 5696 CTGAATTTTAGCT-TTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGG 5754 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||| ||||| ||||||||||||||| Sbjct 5755 TCTTGCCGGTCAATGTTTTGACAAAAATTTGCATA 5789 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | || ||| || | |||||||||||| || ||||| |||||||||||| Sbjct 6018 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 6077 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | || || ||||| || ||||| | ||||| ||||| ||||| ||| Sbjct 6078 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 6137 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| || ||| |||| || || || ||| || Sbjct 6138 ATACCTTCTTTATCTTGGATTTTAGCT-TTGACATTTTCAATAGTGTCAGATGGTTCCAC 6196 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| |||| ||||| || ||||||||||| Sbjct 6197 TTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || | ||| || ||||| |||||||| ||||||||||| || | ||| | || Sbjct 5348 TAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATC 5407 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || ||||| || || | ||||| || || || || ||| ||||||||||| || Sbjct 5408 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 5467 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||||| || ||| |||| || ||||| || || || || ||||| || Sbjct 5468 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 5527 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| |||| ||| || || |||||||||||| Sbjct 5528 TTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 5561 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || || || |||||||| ||||| ||||| || | | | ||| Sbjct 5805 AAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCT 5864 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | ||||| ||||| || || ||| || |||||||| || Sbjct 5865 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCT 5924 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGG 15329 ||||| ||| || ||| |||| || || || | || ||| || || || ||||| | Sbjct 5925 TGGATTTTTGCT-TTCACATTTTCAATCGTGTC-CGATGGTTCGACTTCCAATGTAATAG 5982 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || | ||||| ||||||||||||||| Sbjct 5983 TCTTACCAGTTAAGGTTTTGACAAAAATTTGCATA 6017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171669615346