Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1705 96.9 3e-15 seq1489 96.9 3e-15 seq1658 89.7 4e-13 >seq1705 Length=717327 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 |||||| | || | || || || ||||| || |||||||| || ||| | | || Sbjct 502641 TAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATC 502582 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||| ||||||||| ||| |||| | || ||||||||| || | || ||||| || Sbjct 502581 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 502522 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | ||| ||||| ||||| ||| | ||||| || Sbjct 502521 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 502462 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| || ||||| ||||| ||||||||||| Sbjct 502461 TTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || ||||| ||||| ||||| || |||| | | || |||| ||||||||| Sbjct 502397 GTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTCCAACTGTTTACCG 502338 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | | |||||||| || | || |||||||| |||||| ||| Sbjct 502337 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTGAATTTTAGCTTTC 502278 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| ||||| ||| | |||||||| || || || || ||| Sbjct 502277 ACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTTGCCGGTCAATGTT 502218 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||||||||| Sbjct 502217 TTGACAAAAATTTGCAT 502201 >seq1489 Length=23360 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 |||||| | || | || || || ||||| || |||||||| || ||| | | || Sbjct 5348 TAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATC 5407 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||| ||||||||| ||| |||| | || ||||||||| || | || ||||| || Sbjct 5408 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 5467 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | ||| ||||| ||||| ||| | ||||| || Sbjct 5468 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 5527 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| || ||||| ||||| ||||||||||| Sbjct 5528 TTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || ||||| ||||| ||||| || |||| | | || |||| ||||||||| Sbjct 5592 GTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTCCAACTGTTTACCG 5651 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | | |||||||| || | || |||||||| |||||| ||| Sbjct 5652 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTGAATTTTAGCTTTC 5711 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| ||||| ||| | |||||||| || || || || ||| Sbjct 5712 ACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTTGCCGGTCAATGTT 5771 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||||||||| Sbjct 5772 TTGACAAAAATTTGCAT 5788 >seq1658 Length=21299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||| ||||| ||||| || |||| || | || |||| |||||||| Sbjct 17830 GTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCTTCCAATTGTTTACCG 17771 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | | || ||||| || | || |||||||| ||||| ||| Sbjct 17770 GCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGGATTTTAGCTTTC 17711 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| ||||| ||| | ||||||||||| || || || ||| Sbjct 17710 ACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTTTTGCCGGTCAATGTT 17651 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||||||||| Sbjct 17650 TTGACAAAAATTTGCAT 17634 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || |||||||| |||||||| | || ||| | ||||||| || || || Sbjct 17373 GTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCCTCCAATTGCTTTCCG 17314 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | | |||||||| || | || |||||||| ||||| ||| Sbjct 17313 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTG 17254 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||| || || ||| ||| | |||||||||||||| ||||| ||| Sbjct 17253 ACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGTTTTACCAGTTAAGGTT 17194 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||||||||||||| Sbjct 17193 TTGACAAAAATTTGCATT 17176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414564180254164