Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1705 102 5e-17 seq1489 102 5e-17 seq1658 98.7 6e-16 >seq1705 Length=717327 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || | ||| | || || || ||||| || |||||||| |||||| | | Sbjct 501959 CGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCA 501900 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||||||| ||| || || ||||||||||| | || || |||||||| Sbjct 501899 TCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTA 501840 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| ||| ||||| |||| || |||| || Sbjct 501839 TCTTGGATTTTAGC---TTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTA 501783 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | ||||| |||||||||||||| Sbjct 501782 ATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || | ||| | || || ||||| || || |||||||| |||||| | | Sbjct 502871 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 502812 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || ||| || || |||||||| || | || || |||||||| Sbjct 502811 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 502752 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| || || |||| || |||| || || Sbjct 502751 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 502692 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | |||||||||||| |||||||| Sbjct 502691 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 >seq1489 Length=23360 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || | ||| | || || || ||||| || |||||||| |||||| | | Sbjct 6030 CGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCA 6089 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||||||| ||| || || ||||||||||| | || || |||||||| Sbjct 6090 TCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTA 6149 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| ||| ||||| |||| || |||| || Sbjct 6150 TCTTGGATTTTAGC---TTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTA 6206 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | ||||| |||||||||||||| Sbjct 6207 ATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || | ||| | || || ||||| || || |||||||| |||||| | | Sbjct 5118 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 5177 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || ||| || || |||||||| || | || || |||||||| Sbjct 5178 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 5237 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| || || |||| || |||| || || Sbjct 5238 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 5297 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | |||||||||||| |||||||| Sbjct 5298 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 >seq1658 Length=21299 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 ||| || || | ||| | || || |||||||| || ||||||||||||||| | | Sbjct 17392 CCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACC 17333 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 || |||||||||||||| ||| || || |||||||| || | || || |||||||| Sbjct 17332 ATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTT 17273 Query 33274 ---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || | | | || ||| || ||| ||| ||||| |||| || |||| || Sbjct 17272 GTCTTGGATTTTAGC---TTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGT 17216 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | ||||| || ||||||||||| Sbjct 17215 AATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || | ||| | || || ||||| || || |||||||| |||||| | | Sbjct 18305 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 18246 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || ||| || || |||||||| || | || || |||||||| Sbjct 18245 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 18186 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| || || |||| || |||| || || Sbjct 18185 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 18126 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | |||||||||||| |||||||| Sbjct 18125 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||||||||| || |||||||| ||||||||||| |||||| | | Sbjct 17163 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGGACAAAGTTCGACCA 17104 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCT 33268 || || ||||| || ||| ||| || ||||||||||| || | || || ||| Sbjct 17103 TCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTGGAATACCT 17050 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/222 (70%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||| | ||| | || || |||||||| ||||| |||||| ||| || || Sbjct 17848 CGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAA--TGTTCTGC 17791 Query 33215 --TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272 || |||||||| || || ||| || |||||||| || || | || || ||||||| Sbjct 17790 CATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTT 17731 Query 33273 TTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAACGTCCAGA 33328 | || | | | || ||| || ||| ||| || || | ||| | || | |||| | Sbjct 17730 TGTCCTGGATTTTAGC---TTTCACGTTTTCAATGGTATCTGATGGCTCGA-CTTCCAAA 17675 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || || | ||||| || |||||||||||| Sbjct 17674 GTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318770972015988