Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1705 129 4e-25 seq1658 129 4e-25 seq1489 129 4e-25 >seq1705 Length=717327 Score = 129 bits (142), Expect = 4e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||||| ||||| || |||||| || ||| |||| |||||||| Sbjct 502860 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTG 502801 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| || ||||| |||||||||||||| || | || | ||||||||| ||| |||||| Sbjct 502800 TTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 502741 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||| || | ||| ||||| | || ||||| || | || ||||||||||| || Sbjct 502740 AGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGT 502681 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| Sbjct 502680 CAAAGTTTTTACGAATATTTGCAT 502657 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 || ||| || | ||| || ||| || ||||| || || |||||| || || | Sbjct 501960 TCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACC 501901 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| |||||||| ||||| ||||| ||||| ||||||||||| | || | ||||||||| Sbjct 501900 ATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTT 501841 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 |||| ||||| |||||| | ||| ||| || | || ||||| || | ||||| Sbjct 501840 ATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAAT 501781 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || ||||| || |||||||| Sbjct 501780 GGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || | ||| || ||| |||||||| ||||||||||| | ||| || |||| Sbjct 502413 TAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATC 502354 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| ||||| || ||||| |||||||||||||| || | || | ||||||||| || Sbjct 502353 TTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTC 502294 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 |||||| ||| || | ||| ||||| | ||||| || || | ||||| || Sbjct 502293 CTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGT 502234 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || || ||||| |||||||| Sbjct 502233 CTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||| | ||| || ||| |||||||| || || ||||| | || || |||| Sbjct 502641 TAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATC 502582 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| ||||| || ||||| ||||| || ||||| || | || | ||||||||||| Sbjct 502581 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 502522 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | | | ||||||| ||||| || || | |||||||| Sbjct 502521 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 502462 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| || |||||||| || || |||||||| Sbjct 502461 TTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| || |||||||| |||| ||| |||| || | |||||| || ||||| Sbjct 502163 TCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAA 502104 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| |||||||| || | || | ||||||||||||| |||||| ||| || | Sbjct 502103 ATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTT 502044 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | || || || || | ||||| || ||||| ||||| || || ||| Sbjct 502043 TCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACA 501984 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 501983 AAAATTTGCAT 501973 >seq1658 Length=21299 Score = 129 bits (142), Expect = 4e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||||| ||||| || |||||| || ||| |||| |||||||| Sbjct 18294 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTG 18235 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| || ||||| |||||||||||||| || | || | ||||||||| ||| |||||| Sbjct 18234 TTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 18175 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||| || | ||| ||||| | || ||||| || | || ||||||||||| || Sbjct 18174 AGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGT 18115 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| Sbjct 18114 CAAAGTTTTTACGAATATTTGCAT 18091 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || | ||| || ||| ||||||||||| || ||||| || || |||| Sbjct 17389 TAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATC 17330 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||| ||||| ||||| |||||||||||||| || | || | ||||||||| || Sbjct 17329 CTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTC 17270 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||| |||||| | ||| ||| || | || ||||| || | ||||| || Sbjct 17269 TTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGT 17210 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| ||||| || || ||||| |||||||| Sbjct 17209 TTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 120 bits (132), Expect = 2e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||| | ||| || ||| |||||||| || || ||||| | || || |||| Sbjct 18074 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCT 18015 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC- 44028 ||||| ||||| || ||||| ||||| || ||||| || | || | ||||||||||| Sbjct 18014 TCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCT 17955 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 |||| ||| ||| || | | | ||||||| ||||| || || | |||||||| Sbjct 17954 TGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 17895 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| || |||||||| || ||||||||||| Sbjct 17894 TTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||| | ||| || || |||||||| ||||||||||| | ||| | |||| Sbjct 17845 AACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCT 17786 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| ||||| || || | || | |||||||| || Sbjct 17785 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCC 17726 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||| || | ||| ||||||| ||||| || || | ||||| ||| Sbjct 17725 TGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTT 17666 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || ||||| || || || ||||| ||||||||| Sbjct 17665 TTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||||||||||| ||||||||| ||| ||| |||| ||| Sbjct 16857 ACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGACAATGTACGGCCATCTTCC 16798 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||||||||||| ||||| ||||| |||||||| || | || | |||| Sbjct 16797 AATTGTTTTCCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCT 16750 >seq1489 Length=23360 Score = 129 bits (142), Expect = 4e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||||| ||||| || |||||| || ||| |||| |||||||| Sbjct 5129 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTG 5188 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| || ||||| |||||||||||||| || | || | ||||||||| ||| |||||| Sbjct 5189 TTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 5248 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||| || | ||| ||||| | || ||||| || | || ||||||||||| || Sbjct 5249 AGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGT 5308 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| Sbjct 5309 CAAAGTTTTTACGAATATTTGCAT 5332 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||| | ||| || ||| |||||||| || || ||||| | || || |||| Sbjct 5348 TAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATC 5407 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| ||||| || ||||| ||||| || ||||| || | || | ||||||||||| Sbjct 5408 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 5467 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | | | ||||||| ||||| || || | |||||||| Sbjct 5468 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 5527 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| || |||||||| || || |||||||| Sbjct 5528 TTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || | ||| || ||| |||||||| ||||||||||| | ||| || |||| Sbjct 5576 TAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATC 5635 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| ||||| || ||||| |||||||||||||| || | || | ||||||||| || Sbjct 5636 TTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTC 5695 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 |||||| ||| || | ||| ||||| | ||||| || || | ||||| || Sbjct 5696 CTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGT 5755 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || || ||||| |||||||| Sbjct 5756 CTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 || ||| || | ||| || ||| || ||||| || || |||||| || || | Sbjct 6029 TCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACC 6088 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| |||||||| ||||| ||||| ||||| ||||||||||| | || | ||||||||| Sbjct 6089 ATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTT 6148 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 |||| ||||| |||||| | ||| ||| || | || ||||| || | ||||| Sbjct 6149 ATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAAT 6208 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || ||||| || |||||||| Sbjct 6209 GGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| || |||||||| |||| ||| |||| || | |||||| || ||||| Sbjct 5826 TCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAA 5885 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| |||||||| || | || | ||||||||||||| |||||| ||| || | Sbjct 5886 ATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTT 5945 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | || || || || | ||||| || ||||| ||||| || || ||| Sbjct 5946 TCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACA 6005 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 6006 AAAATTTGCAT 6016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770223508488