Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1658 136 3e-27 seq1705 116 3e-21 seq1489 116 3e-21 >seq1658 Length=21299 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||| | ||| || |||||||||||||| || || ||||| | || ||| | ||| Sbjct 17846 CAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATC 17787 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| |||| | | |||||||| || | ||||||||||| Sbjct 17786 TTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 17727 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||| |||||| | ||| | ||| || || ||||| |||||||| Sbjct 17726 CTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGT 17667 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||||||| |||||||||||||||||||| Sbjct 17666 TTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || | ||| || || ||||||||||| ||||||||||| || |||| | ||| Sbjct 17388 AATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCC 17329 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||||||| || || ||| | || | || || ||||| || | ||||||||||| Sbjct 17328 TCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 17269 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||| || | ||| || || |||||| ||||| ||||||||| Sbjct 17268 TGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGTT 17209 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || || || ||||||||||||||||||||| Sbjct 17208 TTACCAGTTAAGGTTTTGACAAAAATTTGCATT 17176 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| || || | | || || | ||| || || |||||||| || |||||||||||| Sbjct 18320 TTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCG 18261 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 || ||| ||||||||||||||| || ||| |||| | || || ||||| Sbjct 18260 GACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGT 18201 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| |||||| ||| || | ||| | ||| |||||| Sbjct 18200 GGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCC 18141 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||| || ||||| || ||||| ||||| || || |||||||| Sbjct 18140 ACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||| | ||| || || ||||||||||| ||||||||||| | || ||| ||| Sbjct 18075 CAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATC 18016 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| ||||| || ||| |||| | | ||| ||||| || | |||||||| || Sbjct 18015 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 17956 Query 20116 GGCAATTTT-TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 |||||| |||||| | | | | ||| || || ||||| ||||| | Sbjct 17955 TTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTG 17896 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || ||||| || |||||||| Sbjct 17895 TTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || |||| | ||| |||||||| | ||||||||||||||| || ||||||||| Sbjct 17177 TTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGG 17118 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCA 20074 || |||| | |||||| ||||||||||| ||| Sbjct 17117 ACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCA 17083 >seq1705 Length=717327 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || | ||| || || ||||||||||| || || ||||| | || ||| |||| Sbjct 502412 AAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCT 502353 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || ||| | || | || || ||||| || | ||||||||||| Sbjct 502352 TCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCC 502293 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| |||||| | ||| | |||| || || ||||| |||||||| Sbjct 502292 TGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTC 502233 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||||| |||||||||||||||||||| Sbjct 502232 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| || || | | || || | ||| || || |||||||| || |||||||||||| Sbjct 502886 TTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCG 502827 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 || ||| ||||||||||||||| || ||| |||| | || || ||||| Sbjct 502826 GACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGT 502767 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| |||||| ||| || | ||| | ||| |||||| Sbjct 502766 GGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCC 502707 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||| || ||||| || ||||| ||||| || || |||||||| Sbjct 502706 ACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 ||||| | ||| || || ||||||||||| ||||||||||| | || ||| |||| Sbjct 502640 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCT 502581 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || ||| |||| | | ||| ||||| || | |||||||| || Sbjct 502580 TCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCT 502521 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| |||||| | | | | ||| || || ||||| ||||| ||| Sbjct 502520 TGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTT 502461 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| || ||||| ||||||||||| Sbjct 502460 TTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || | ||| || || ||||| ||||| |||||||||||| || |||| | ||| Sbjct 501956 AATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCC 501897 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||||||| || || ||| | || | | || || || || | |||||||| || Sbjct 501896 TCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCT 501837 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||| || | ||| || || |||||| ||||| ||||||||| Sbjct 501836 TGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTT 501777 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || ||||| ||||| || |||||||||||| Sbjct 501776 TTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| | ||| || | ||| || |||||||||||||| ||||| ||||| Sbjct 502199 CCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAG-- 502142 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | | |||||| | |||||| || ||| |||| | | || ||||| | Sbjct 502141 ATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTG 502082 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || |||||| |||||| | ||| | || ||||| Sbjct 502081 GGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGA 502022 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || || || || || |||||||||||||||||||| Sbjct 502021 CTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 >seq1489 Length=23360 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || | ||| || || ||||||||||| || || ||||| | || ||| |||| Sbjct 5577 AAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCT 5636 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || ||| | || | || || ||||| || | ||||||||||| Sbjct 5637 TCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCC 5696 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| |||||| | ||| | |||| || || ||||| |||||||| Sbjct 5697 TGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTC 5756 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||||| |||||||||||||||||||| Sbjct 5757 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| || || | | || || | ||| || || |||||||| || |||||||||||| Sbjct 5103 TTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCG 5162 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 || ||| ||||||||||||||| || ||| |||| | || || ||||| Sbjct 5163 GACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGT 5222 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| |||||| ||| || | ||| | ||| |||||| Sbjct 5223 GGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCC 5282 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||| || ||||| || ||||| ||||| || || |||||||| Sbjct 5283 ACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 ||||| | ||| || || ||||||||||| ||||||||||| | || ||| |||| Sbjct 5349 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCT 5408 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || ||| |||| | | ||| ||||| || | |||||||| || Sbjct 5409 TCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCT 5468 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| |||||| | | | | ||| || || ||||| ||||| ||| Sbjct 5469 TGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTT 5528 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| || ||||| ||||||||||| Sbjct 5529 TTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || | ||| || || ||||| ||||| |||||||||||| || |||| | ||| Sbjct 6033 AATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCC 6092 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||||||| || || ||| | || | | || || || || | |||||||| || Sbjct 6093 TCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCT 6152 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||| || | ||| || || |||||| ||||| ||||||||| Sbjct 6153 TGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTT 6212 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || ||||| ||||| || |||||||||||| Sbjct 6213 TTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| | ||| || | ||| || |||||||||||||| ||||| ||||| Sbjct 5790 CCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAG-- 5847 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | | |||||| | |||||| || ||| |||| | | || ||||| | Sbjct 5848 ATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTG 5907 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || |||||| |||||| | ||| | || ||||| Sbjct 5908 GGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGA 5967 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || || || || || |||||||||||||||||||| Sbjct 5968 CTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419578475995386