Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1705 354 7e-93 >seq1705 Length=717327 Score = 354 bits (392), Expect = 7e-93 Identities = 641/932 (69%), Gaps = 4/932 (0%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTT 12861 |||||||||| |||| | ||||| | ||| || |||||| ||| |||| Sbjct 625389 TTAAAAATCAGCATCTGTAACAAATATCTGATCTTCAGGCCGTGACATGACACCACTTTT 625448 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||||||| ||| | |||||| ||||| |||| ||| ||||| || ||||| | ||| Sbjct 625449 TTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTCCAATGAAATTTGTTC 625508 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 |||||| || || ||||| || ||| | ||||| ||| ||||||| || || Sbjct 625509 CATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAATTCAATTCTACCAATAA 625568 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 | || ||| | | || || || | |||||| | | ||||| || || ||| Sbjct 625569 ACGATCTGCACAATATTCAATATAATCGGACATTAATTTTGAATTCATGCCAATCAATGA 625628 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 || || | || || || || || | | ||| || || || ||||||| || || Sbjct 625629 AACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACAGCATCGATAATAATATC 625688 Query 13102 TCTTATTACGTTCTC-TAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAAT 13160 ||| |||| | | ||||| |||| | ||| | ||||| | |||||||||| Sbjct 625689 AACAATT-CGTTGTGGTGATGGACGATTACGAATATGGTGAAACAATAAGCATGCAAAAT 625747 Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| || ||||||||||| | || | || || |||||||| ||||| ||||| | Sbjct 625748 CACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAAAATGTAAGACCAGGCATGA 625807 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || |||||||||| |||||| || || ||||| ||||| |||||||| |||||||||| Sbjct 625808 GGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCAGAAAAAAAGATTCCTTCAA 625867 Query 13281 CTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 | |||||||| || ||||| | |||| | | ||| | | || |||| | Sbjct 625868 CGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAATCATCCTGGGTCCAACGTA 625927 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 | ||||| || ||||||| || || || | ||| ||| || || |||| | ||| Sbjct 625928 TAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACGTATGGCATTGAATAGAAAAT 625987 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 || ||| ||| || | | ||| |||| |||||||| ||||||||||||||||| Sbjct 625988 CTTGTTCACTACGATCCGATACATATGTATTGATCAATAATGAATACATTTCTGAATGAA 626047 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-G 13519 |||||| || || ||||| || ||||||||||| | || |||| || || || || Sbjct 626048 CATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTGCTTCTGGTATTTGTACATCAC 626107 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579 || ||||| | ||| || | ||||| || || || || || || ||||||||||| || Sbjct 626108 GAATAAAA-CGTTCGGCCAGATTTTCATTGACAATACCATCGCTTGCAGCAAAAAATGCC 626166 Query 13580 AGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCT 13639 | || || |||| || | |||||| ||| | ||| | ||||| | || ||| Sbjct 626167 AATACATGTGTAATGAAATGTTTTTCATTTGCATTCAATTGATTCCAATGGGCAATATCA 626226 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATC 13699 || ||| || || ||||| ||||| || || || |||| || |||||||| ||| Sbjct 626227 CGACTTAGATCCACTTCTTCAACTGTCCAGAATGATGCTTCAGCTTTTTTATACATGATC 626286 Query 13700 CATATATCCTTATAAACAATGGGAAACACAAC 13731 || || || | ||| ||| ||||||| ||| Sbjct 626287 CAAATGTCATGATATTGAATTGGAAACAAAAC 626318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973439067812