Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1705 161 2e-34 seq1489 161 2e-34 seq1658 152 1e-31 seq981 86.0 1e-11 >seq1705 Length=717327 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||||||||| || || ||||| ||||||| || | || ||||| Sbjct 502181 ACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTCA 502122 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| ||||||||||| | | || ||||| || || || ||||||||||| || Sbjct 502121 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTGG 502062 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || |||||||| |||||||| | || || ||||| || || | ||||||||||||| Sbjct 502061 ATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTTA 502002 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| ||||| || ||||| Sbjct 502001 CCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | || |||||||||||||| || || || || | ||| | || ||| Sbjct 502868 AGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCT 502809 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || |||||||| | || || ||||| || || || |||||||| || Sbjct 502808 TCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 502749 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || |||||||||||||| | |||||| ||||| || || | || || || Sbjct 502748 TGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTT 502689 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | |||||||| ||||| ||||| Sbjct 502688 TTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 123 bits (136), Expect = 6e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | || ||||| || || || || || || || | ||||| ||| || || Sbjct 501954 TACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTC 501895 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | ||| ||||||||||| || | | || || || || || || ||||||||||| || Sbjct 501894 CAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTG 501835 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| |||||||| | || || ||||| || || | |||||| || || Sbjct 501834 GATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTTTT 501775 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| | |||||| || || || |||||| Sbjct 501774 ACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || |||||||| || || || || ||| | |||| || ||||| Sbjct 502637 ACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCC 502578 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||| || |||||||| | | ||| ||||| || || |||||||||||||| ||| Sbjct 502577 AACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGA 502518 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| |||||||| | ||||| || || || || | |||||| || ||| Sbjct 502517 ATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTTA 502458 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || || || || ||||| Sbjct 502457 CCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | | ||| | ||| ||||||||||| || ||||||||||| || Sbjct 501746 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCG 501687 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| ||| ||||||| |||||| |||||||| || | | || ||||| || Sbjct 501686 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 501627 Query 104450 GGTATTCCT 104458 || || ||| Sbjct 501626 GGAATACCT 501618 >seq1489 Length=23360 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||||||||| || || ||||| ||||||| || | || ||||| Sbjct 5808 ACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTCA 5867 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| ||||||||||| | | || ||||| || || || ||||||||||| || Sbjct 5868 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTGG 5927 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || |||||||| |||||||| | || || ||||| || || | ||||||||||||| Sbjct 5928 ATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTTA 5987 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| ||||| || ||||| Sbjct 5988 CCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | || |||||||||||||| || || || || | ||| | || ||| Sbjct 5121 AGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCT 5180 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || |||||||| | || || ||||| || || || |||||||| || Sbjct 5181 TCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 5240 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || |||||||||||||| | |||||| ||||| || || | || || || Sbjct 5241 TGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTT 5300 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | |||||||| ||||| ||||| Sbjct 5301 TTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 123 bits (136), Expect = 6e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | || ||||| || || || || || || || | ||||| ||| || || Sbjct 6035 TACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTC 6094 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | ||| ||||||||||| || | | || || || || || || ||||||||||| || Sbjct 6095 CAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTG 6154 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| |||||||| | || || ||||| || || | |||||| || || Sbjct 6155 GATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTTTT 6214 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| | |||||| || || || |||||| Sbjct 6215 ACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || |||||||| || || || || ||| | |||| || ||||| Sbjct 5352 ACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCC 5411 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||| || |||||||| | | ||| ||||| || || |||||||||||||| ||| Sbjct 5412 AACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGA 5471 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| |||||||| | ||||| || || || || | |||||| || ||| Sbjct 5472 ATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTTA 5531 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || || || || ||||| Sbjct 5532 CCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | | ||| | ||| ||||||||||| || ||||||||||| || Sbjct 6243 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCG 6302 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| ||| ||||||| |||||| |||||||| || | | || ||||| || Sbjct 6303 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 6362 Query 104450 GGTATTCCT 104458 || || ||| Sbjct 6363 GGAATACCT 6371 >seq1658 Length=21299 Score = 152 bits (168), Expect = 1e-31 Identities = 161/211 (76%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| || ||||| | || ||||| || || || ||||||||||||| || | || | Sbjct 17618 TAAG-ACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGATAATGTACGGCCAT 17560 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||| |||||||| ||||||||||| | | || ||||| || || || || ||||||| Sbjct 17559 CTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGAATACCCTCTTTAT 17500 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | || || |||||||| |||||||| | || || ||||| || || |||||||||| Sbjct 17499 CTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAGTGTAATAG 17440 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 |||||||||| | ||||| ||||| || || Sbjct 17439 TCTTACCAGTTAAGGTTTTGACAAAGATTTG 17409 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | || |||||||||||||| || || || || | ||| | || ||| Sbjct 18302 AGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCT 18243 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || |||||||| | || || ||||| || || || |||||||| || Sbjct 18242 TCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 18183 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || |||||||||||||| | |||||| ||||| || || | || || || Sbjct 18182 TGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTT 18123 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | |||||||| ||||| ||||| Sbjct 18122 TTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||||||||| || |||||||| ||| | ||||| || ||||| Sbjct 17842 ACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCTTCC 17783 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||| || |||||||| | | |||||||| || || ||||||||||| ||||| Sbjct 17782 AATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGG 17723 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| || ||||| | |||||| || || || || | ||||| || || Sbjct 17722 ATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTTTTG 17663 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | |||||| ||||| || ||||| Sbjct 17662 CCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 123 bits (136), Expect = 6e-23 Identities = 154/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || |||||||| || || || || ||| | |||| || ||||| Sbjct 18071 ACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCC 18012 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||| || |||||||| | | ||| ||||| || || |||||||||||||| ||| Sbjct 18011 AACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGA 17952 Query 104471 ATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || |||||| |||||||| | ||||| || || || || | |||||| || || Sbjct 17951 ATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTT 17892 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | || || || ||||| ||||| Sbjct 17891 ACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | | ||| | ||| |||||||||||||| |||||||| || || Sbjct 17178 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCG 17119 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| ||| ||||||| |||||| |||||||| || | | || ||||| || Sbjct 17118 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 17059 Query 104450 GGTATTCCT 104458 || || ||| Sbjct 17058 GGAATACCT 17050 >seq981 Length=445179 Score = 86.0 bits (94), Expect = 1e-11 Identities = 235/352 (67%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 165087 CTATTTATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTAC 165146 |||||||| ||| |||||||||| || |||| ||||| || ||||| | | Sbjct 240031 CTATTTATCGAGATGCCGATGAATGGACAACATGGACCAAAATGGGTGACCCTGTACTTC 239972 Query 165147 ATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTT 165206 |||| || |||||| ||||| ||||| |||| || || || || |||| Sbjct 239971 ATATTGAATTAAGAAATTGGGCCGATATCGGCGTGATTGCTCCATTGGACGCCAACACAA 239912 Query 165207 TAGCGAAGATAGCTAACGGTATCTGTAATAA-CTTGTTAACGTGTATAGTTAGAGCGTGG 165265 | | || || ||||||| |||||| |||| || | | | ||| |||| | || ||| Sbjct 239911 TGGGAAAATTATCTAACGGAATCTGTGATAATCTCGCTT-CTTGTGTAGTACGTGCTTGG 239853 Query 165266 AATATTAATAAACCTTTACTTTTCTGT-CCAGCTATGAATACACTTATGTGGGAACATCC 165324 |||| || ||| || || | || || || ||||| | | ||||||| |||| Sbjct 239852 GATATAAACAAAAAACTA-TTATATGCACCGGCCATGAACGCTCATATGTGGACTCATCG 239794 Query 165325 TATTACTGAGCAGCATATAGAAACTCTTAAGC-ATATGGGGTACATAGAAGTTGAGTGTA 165383 || || || | ||| | | |||||| | || | || || || || ||| | Sbjct 239793 AATAACGGAAAAATGTATC-AGAGTCTTAAACGATTTAGGCTATATTCAAATTGGACCGA 239735 Query 165384 TTGAGAAAAAGCTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435 || || || ||||||||||||||| |||||| || |||||||||||||| Sbjct 239734 TTTGTAAGAAACTAGCTTGTGGTGATTTTGGAATGGGAGCCATGGCAGAAGT 239683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151373232589848