Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq229 237 2e-58 seq981 232 1e-56 seq808 232 1e-56 seq1058 219 7e-53 seq111 219 7e-53 seq10 219 7e-53 seq1313 210 3e-50 seq1057 210 3e-50 seq809 206 4e-49 >seq229 Length=179696 Score = 237 bits (262), Expect = 2e-58 Identities = 216/270 (80%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | ||| || |||||||||||||| |||||||| |||||||| Sbjct 86725 CGCTAAACGTCATCGTAAAGTTCTCCGTGATAACATCCAAGGTATCACCAAACCAGCTAT 86666 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| || || ||| | || || ||| |||| ||||| | Sbjct 86665 CCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCCGGCTTGATCTACGAAGAAAC 86606 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||||| || ||||| | ||| | | | ||||||| ||||||| || || ||||| | Sbjct 86605 TCGTGGCGTATTGAAAGTATTCTTGGAAAATGTTATCCGTGATGCTGTTACA-TATACTG 86547 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | |||||||||||||| || || ||| | |||||| |||| ||||| ||||||||||||| Sbjct 86546 AACACGCTAAACGTAAAACGGTAACCGCTATGGATGTCGTTTATGCTTTGAAACGTCAAG 86487 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | |||| | ||||||||||| |||||| Sbjct 86486 GACGTACTTTGTATGGTTTTGGTGGTTAAT 86457 Score = 219 bits (242), Expect = 7e-53 Identities = 220/282 (78%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | ||| || |||||||||||||| |||||||| |||||||| Sbjct 82983 CGCCAAACGTCATCGTAAAGTTCTCCGTGATAACATCCAAGGTATCACCAAACCAGCTAT 82924 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||||||||||| || || ||| | || || ||| |||| ||||| | Sbjct 82923 TCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCCGGCTTGATCTACGAAGAAAC 82864 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||||| || ||||| | || || | | ||||||| |||||| || || ||||| | Sbjct 82863 TCGTGGCGTATTGAAAGTATTTCTGGAAAATGTTATCCGCGATGCTGTTACA-TATACTG 82805 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | |||||||||||||| || || ||| | |||||| | || |||||| | ||||| |||| Sbjct 82804 AACACGCTAAACGTAAAACGGTAACCGCTATGGATGTTGTATATGCACTCAAACGACAAG 82745 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATC-TTCTAATCAA 16711 |||||| | ||||||||||| ||||||| | | |||||| Sbjct 82744 GCCGTACATTATATGGTTTTGGTGGTTAATCATCCCAATCAA 82703 >seq981 Length=445179 Score = 232 bits (256), Expect = 1e-56 Identities = 212/268 (79%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | |||||| ||||| |||||||| ||||| || |||||||| Sbjct 222386 CGCTAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCAGCTAT 222327 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| || || ||| | || |||||| | |||||||| | Sbjct 222326 CCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCCGGATTGATATATGAAGAAAC 222267 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || || || | || || | | ||| |||| |||||| || |||||||| Sbjct 222266 ACGTGGCGTATTAAAAGTTTTTCTTGAAAACGTCATCCGCGATGCTGTCACTTATACCGA 222207 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||||||||||| || ||||| |||||||| | || |||||||||||||||||||| Sbjct 222206 GCATGCTAAACGTAAAACCGTCACTGCCATGGATGTTGTTTATGCATTGAAACGTCAAGG 222147 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||| ||||| Sbjct 222146 ACGTACCTTGTATGGTTTTGGCGGTTAA 222119 >seq808 Length=107531 Score = 232 bits (256), Expect = 1e-56 Identities = 215/270 (80%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | ||| || |||||||||||||| |||||||| |||||||| Sbjct 85486 CGCTAAACGTCATCGTAAAGTTCTCCGTGATAACATCCAAGGTATCACCAAACCAGCTAT 85427 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| || || ||| ||||||| ||| |||| ||||| | Sbjct 85426 CCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATCTCTGGCTTGATCTACGAAGAAAC 85367 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 || | ||| | ||| | || ||| | | ||||||| |||||| || || || || | Sbjct 85366 CCGAGGTGTCCTCAAGGTTTTTCTCGAAAATGTTATCCGCGATGCTGTTACA-TACACTG 85308 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || ||||||||||| ||||| |||||||| |||| ||||| ||||||||||||| Sbjct 85307 AACATGCAAAACGTAAGACAGTCACTGCCATGGATGTCGTTTATGCTTTGAAACGTCAAG 85248 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | |||| | ||||||||||| |||||| Sbjct 85247 GACGTACTTTGTATGGTTTTGGTGGTTAAT 85218 Score = 223 bits (246), Expect = 5e-54 Identities = 221/282 (78%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | ||| || |||||||||||||| |||||||| |||||||| Sbjct 82188 CGCCAAACGTCATCGTAAAGTTCTCCGTGATAACATCCAAGGTATCACCAAACCAGCTAT 82129 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||||||||||| || || ||| | || || ||| |||| ||||| | Sbjct 82128 TCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCCGGCTTGATCTACGAAGAAAC 82069 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||||| || ||||| | ||| | | | ||||||| ||||||| || || ||||| | Sbjct 82068 TCGTGGCGTATTGAAAGTATTCTTGGAAAATGTTATCCGTGATGCTGTTACA-TATACTG 82010 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | |||||||||||||| || || ||| | |||||| | || |||||| | ||||| |||| Sbjct 82009 AACACGCTAAACGTAAAACGGTAACCGCTATGGATGTTGTATATGCACTCAAACGACAAG 81950 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATC-TTCTAATCAA 16711 |||||| | ||||||||||| ||||||| | | |||||| Sbjct 81949 GCCGTACATTATATGGTTTTGGTGGTTAATCATCCCAATCAA 81908 >seq1058 Length=417961 Score = 219 bits (242), Expect = 7e-53 Identities = 212/270 (79%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | |||||| ||||| |||||||| ||||| || |||||||| Sbjct 169958 CGCTAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCAGCTAT 170017 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| || || ||| ||||||| ||| |||| ||||| | Sbjct 170018 CCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATCTCTGGCTTGATCTACGAAGAAAC 170077 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 || | ||| | || | || ||| | | ||||||| ||||||| || || || || | Sbjct 170078 CCGAGGTGTCCTCAAAGTTTTTCTCGAAAATGTTATCCGTGATGCTGTTACA-TACACTG 170136 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || |||||||| || ||||| |||||||| | || ||||| ||||||||||||| Sbjct 170137 AACATGCAAAACGTAAAACAGTCACTGCCATGGATGTTGTTTATGCTTTGAAACGTCAAG 170196 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | |||| | ||||||||||| |||||| Sbjct 170197 GACGTACTTTGTATGGTTTTGGTGGTTAAT 170226 >seq111 Length=739037 Score = 219 bits (242), Expect = 7e-53 Identities = 212/270 (79%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | ||| || ||||| |||||||| ||||| || |||||||| Sbjct 242753 CGCTAAACGTCATCGTAAAGTTCTCCGTGATAATATCCAAGGTATCACAAAACCAGCTAT 242812 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| || || ||| ||||||| ||| |||| ||||| | Sbjct 242813 CCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATCTCTGGCTTGATCTACGAAGAAAC 242872 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 || | ||| | ||| | || ||| | | ||||||| ||||||| || || || || | Sbjct 242873 CCGAGGTGTCCTCAAGGTTTTTCTCGAAAATGTTATCCGTGATGCTGTTACA-TACACTG 242931 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || |||||||| || ||||| |||||||| | || ||||| ||||||||||||| Sbjct 242932 AACATGCAAAACGTAAAACAGTCACTGCCATGGATGTTGTTTATGCTTTGAAACGTCAAG 242991 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | |||| | ||||||||||| |||||| Sbjct 242992 GACGTACTTTATATGGTTTTGGTGGTTAAT 243021 >seq10 Length=20485 Score = 219 bits (242), Expect = 7e-53 Identities = 212/270 (79%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | |||||| ||||| |||||||| ||||| || |||||||| Sbjct 9561 CGCTAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCAGCTAT 9620 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| || || ||| ||||||| ||| |||| ||||| | Sbjct 9621 CCGTCGTTTGGCTCGTCGTGGTGGTGTAAAACGTATCTCTGGCTTGATCTACGAAGAAAC 9680 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 || | ||| | || | || ||| | | ||||||| ||||||| || || || || | Sbjct 9681 CCGAGGTGTCCTCAAAGTTTTTCTCGAAAATGTTATCCGTGATGCTGTTACA-TACACTG 9739 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || |||||||| || ||||| |||||||| | || ||||| ||||||||||||| Sbjct 9740 AACATGCAAAACGTAAAACAGTCACTGCCATGGATGTTGTTTATGCTTTGAAACGTCAAG 9799 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | |||| | ||||||||||| |||||| Sbjct 9800 GACGTACTTTGTATGGTTTTGGTGGTTAAT 9829 >seq1313 Length=25744 Score = 210 bits (232), Expect = 3e-50 Identities = 208/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | |||||| ||||| || ||||| || || || |||||||| Sbjct 22307 CGCAAAACGTCATCGTAAAGTTCTTCGTGATAATATTCAAGGTATTACGAAACCAGCTAT 22248 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | |||||||||||||| ||||| ||| | ||||| | | |||||||| | Sbjct 22247 TCGTCGTTTAGCTCGTCGTGGTGGTGTCAAACGTATTTCTGGTCTAATTTATGAAGAAAC 22188 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| | | ||||||| ||||||| || |||||| || Sbjct 22187 CCGTGGTGTACTCAAAGTATTCCTTGAAAATGTTATCCGTGATGCTGTCACCTATACTGA 22128 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||||||| |||||||| | |||||| | || |||||||||||||||||||| Sbjct 22127 ACATGCTAAACGTAAAACTGTCACTGCTATGGATGTTGTATATGCATTGAAACGTCAAGG 22068 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | ||||||||||| |||||| Sbjct 22067 ACGTACATTGTATGGTTTTGGTGGTTAAT 22039 >seq1057 Length=31605 Score = 210 bits (232), Expect = 3e-50 Identities = 208/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | |||||| ||||| || ||||| || || || |||||||| Sbjct 6576 CGCAAAACGTCATCGTAAAGTTCTTCGTGATAATATTCAAGGTATTACGAAACCAGCTAT 6635 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | |||||||||||||| ||||| ||| | ||||| | | |||||||| | Sbjct 6636 TCGTCGTTTAGCTCGTCGTGGTGGTGTCAAACGTATTTCTGGTCTAATTTATGAAGAAAC 6695 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| | | ||||||| ||||||| || |||||| || Sbjct 6696 CCGTGGTGTACTCAAAGTATTCCTTGAAAATGTTATCCGTGATGCTGTCACCTATACTGA 6755 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||||||| |||||||| | |||||| | || |||||||||||||||||||| Sbjct 6756 ACATGCTAAACGTAAAACTGTCACTGCTATGGATGTTGTATATGCATTGAAACGTCAAGG 6815 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | ||||||||||| |||||| Sbjct 6816 ACGTACATTGTATGGTTTTGGTGGTTAAT 6844 >seq809 Length=106819 Score = 206 bits (228), Expect = 4e-49 Identities = 207/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | |||||| ||||| || ||||| || || || |||||||| Sbjct 92763 CGCAAAACGTCATCGTAAAGTTCTTCGTGATAATATTCAAGGTATTACGAAACCAGCTAT 92822 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | |||||||||||||| ||||| ||| | ||||| | | |||||||| | Sbjct 92823 TCGTCGTTTAGCTCGTCGTGGTGGTGTCAAACGTATTTCTGGTCTAATTTATGAAGAAAC 92882 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| | | ||||| | ||||||| || |||||| || Sbjct 92883 CCGTGGTGTACTCAAAGTATTCCTTGAAAATGTTATTCGTGATGCTGTCACCTATACTGA 92942 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||||||| |||||||| | |||||| | || |||||||||||||||||||| Sbjct 92943 ACATGCTAAACGTAAAACTGTCACTGCTATGGATGTTGTATATGCATTGAAACGTCAAGG 93002 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | ||||||||||| |||||| Sbjct 93003 ACGTACATTGTATGGTTTTGGTGGTTAAT 93031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073640192258