Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1399 161 2e-34 seq1631 149 1e-30 >seq1399 Length=306096 Score = 161 bits (178), Expect = 2e-34 Identities = 253/357 (71%), Gaps = 5/357 (1%) Strand=Plus/Plus Query 193842 GAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGG 193901 ||||| |||||||| ||||||| || || || ||||| ||||| | | | ||||||| Sbjct 139368 GAAACAACACCATTCTATCCACGATCACCATACGGTGTGGCAAAATCATTCGCTTATTGG 139427 Query 193902 ATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAAT 193961 || | ||||||||||| | |||| | | || |||||| || |||||| Sbjct 139428 ATTGTTGTCAATTATCGTGAAGCTTATGAAATGTTTGCCGTCAATGGTATACTTTTCAAT 139487 Query 193962 CACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCT 194021 || ||||| || || | ||||| |||||||| |||||||| ||||||| ||| | | Sbjct 139488 CATGAATCACCTCGACGCGGTGAAACATTTGTCACTCGTAAAATTACACGCGGTGTTGCG 139547 Query 194022 AAGATCTCTGTTGGA--TTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGG 194079 || || ||| | | |||| | | || | | |||||||| || | || || | Sbjct 139548 AAAAT-TCTCCTAAACCGGCAAGAATA-TATTGAATTGGGTAATCTGGATTCAAAAAGAG 139605 Query 194080 ATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAAC 194139 ||||||| |||||| |||||||| ||||| |||||| ||||||| |||||||| | | Sbjct 139606 ATTGGGGCCACGCACGTGATTATGTGGAAGCAATGTGGCTAATGTTACAACAGGAAAATC 139665 Query 194140 CCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAGACTTTGT-GAAT 194195 | || |||| ||| || || || |||||| |||| ||| | || ||||| |||| Sbjct 139666 CAGAAGATTTTGTTATCGCAACTGGTGAAGCACATTCAGTTCGTGAATTTGTCGAAT 139722 >seq1631 Length=21602 Score = 149 bits (164), Expect = 1e-30 Identities = 251/357 (70%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 193842 GAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGG 193901 ||||| |||||||| ||||||| || || || ||||| ||||| | | | ||||||| Sbjct 13514 GAAACAACACCATTCTATCCACGATCACCATACGGTGTGGCAAAATCATTCGCTTATTGG 13455 Query 193902 ATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAAT 193961 || | ||||||||||| | |||| | | || |||||| || |||||| Sbjct 13454 ATTGTTGTCAATTATCGTGAAGCTTATGAAATGTTTGCCGTCAATGGTATACTATTCAAT 13395 Query 193962 CACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCT 194021 || ||||| || || | ||||| |||||||| |||||||| ||||||| || | | Sbjct 13394 CATGAATCACCTCGACGCGGTGAAACATTTGTCACTCGTAAAATTACAC-GTGTGTTGCG 13336 Query 194022 AAGATCTCTGTTGGA--TTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGG 194079 || || ||| | | |||| | | || | | |||||||| || | || | | Sbjct 13335 AAAAT-TCTCCTAAACCGGCAAGAATA-TATTGAATTGGGTAATCTGGATTCAAAACGAG 13278 Query 194080 ATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAAC 194139 ||||||| |||||| |||||||| ||||| |||||| ||||||| |||||||| | | Sbjct 13277 ATTGGGGCCACGCACGTGATTATGTGGAAGCAATGTGGCTAATGTTACAACAGGAAAATC 13218 Query 194140 CCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAGACTTTGT-GAAT 194195 | || |||| ||| || || || |||||| |||| ||| | || ||||| |||| Sbjct 13217 CAGAAGATTTTGTTATCGCAACTGGTGAAGCACATTCAGTTCGTGAATTTGTCGAAT 13161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807537978885360