Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1705 347 1e-90 >seq1705 Length=717327 Score = 347 bits (384), Expect = 1e-90 Identities = 650/942 (69%), Gaps = 18/942 (2%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAA-ACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||||||||| | | ||| | | |||||| |||||| | || ||| Sbjct 625389 TTAAAAATCAGCATCTG-TAACAAATATCTGATCTTCAGGCCGTGACATGACACCACTTT 625447 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || ||| | ||||||||||||||||| || ||||||||||| || || Sbjct 625448 TTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTCCAATGAAATTTGTT 625507 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTA-AATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||||| ||||||||||| | | |||| ||| |||| | |||| || |||| ||| Sbjct 625508 CCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTT-TCACAATTCAATTCTACCAAT 625566 Query 21305 AATCTATCTGCTACAA-ATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 || | |||||| |||| |||| ||||| | ||||||||| ||||||| || ||||| Sbjct 625567 AAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGAATTCATGCCAATCAA 625625 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 | || || | || | ||||| || | ||| || || || || || | ||| || Sbjct 625626 TGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACAGCATCGATAATAAT 625685 Query 21424 ATTTATTATCC-TAGATGTACTAGGGGGATAC-AATAATTGTTTAAACATCAAACATGCA 21481 || | || | | | || | | | ||| |||| || | ||||| || |||||| Sbjct 625686 ATCAACAATTCGTTGTGGTGATGGACGATTACGAATA--TGGTGAAACAATAAGCATGCA 625743 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 ||||||||||| || |||||||| | || |||||||| |||||||| | ||| ||| Sbjct 625744 AAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAAAATGTAAGACCAGGC 625803 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 || | || | ||||| | |||||| |||| ||||||| || ||||| || || || Sbjct 625804 ATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCAGAAAAAAAGATTCCT 625863 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 |||||||| |||||||||| || |||||| || ||||| | | |||| |||| Sbjct 625864 TCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAATCATCCTGGGTCCAA 625923 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAA--TCAATTGTATCAATAGCTTTTAAAA 21719 | |||||||| || |||| || | |||| | ||| || || || || || | Sbjct 625924 CGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAAT--TACGTATGGCATTGAATA 625981 Query 21720 GATGAtttttttCATCTAC-ATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 || || || |||| |||| ||| | || ||||||||| Sbjct 625982 GAAAATCTTGTTCA-CTACGATCCGATACATATGTATTGATCAATAATGAATACATTTCT 626040 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 ||||| | |||||| || || || ||||| || |||||||| | ||| |||| ||| Sbjct 626041 GAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTGCTTCTGGTATTTGT 626100 Query 21839 ACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAA 21897 || || |||||||| |||| |||| |||||||| || || ||||| || || ||||| Sbjct 626101 ACATCACGAATAAAA-CGTTCGGCCAGATTTTCATTGACAATACCATCGCTTGCAGCAAA 626159 Query 21898 AAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAA 21957 ||||||||||| || | | || |||| | ||| || | | |||| ||||||| Sbjct 626160 AAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTCAATTGATTCCAATGGGC 626219 Query 21958 TAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATA 22017 | ||| || ||| ||||||||| |||||| || || ||| |||||||| Sbjct 626220 AATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGATGCTTCAGCTTTTTTATA 626279 Query 22018 CATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||| ||||| || |||| |||| |||||||| | ||||| Sbjct 626280 CATGATCCAAATGTCATGATATTGAATTGGAAACAAAACAAA 626321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531889457215440