Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1123 199 1e-45 seq1705 190 5e-43 seq1179 143 7e-29 seq206 116 1e-20 seq904 107 5e-18 >seq1123 Length=366939 Score = 199 bits (220), Expect = 1e-45 Identities = 578/880 (66%), Gaps = 36/880 (4%) Strand=Plus/Minus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 |||| ||||| || || |||||||| |||||| |||||||||||| ||| | ||| Sbjct 24908 TTGTCGAACGACCCCAACATATGTTGATGCGTTGTGCTATTGGTATTCATGGTGATGATA 24849 Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-----TTCACGCACGC 363557 | |||||||| |||||||| ||||| | ||| |||| | || || || || Sbjct 24848 TCGATGCCGCCATTGAAACGTATAA---TTTAAT--CTCGGAAAATTGGTTTACACATGC 24794 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 | || ||| ||| ||||| || || ||||| | || || || ||||| || Sbjct 24793 ATCACCTACATTGTTTAATGCCGGCACAAAACGGCCACAATTATCATCATGTTTTCTGCT 24734 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 | |||| || ||| || || ||||| | ||| || ||||| |||||||| |||| Sbjct 24733 TACTATGAGTGATGATAGTATTGAAGGTATATATGATACCCTTAAAAATTGTGCCATTAT 24674 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGT-GCA-CAGAAC--- 363732 ||| || || ||||| |||||| | ||||||| | | | | || | Sbjct 24673 TTCAAAATCAGCTGGCGGTATTGGTCTT---------AATGTTCATTGTATCCGATCTTC 24623 Query 363733 ----AGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 ||||| ||| ||| || |||| || ||||| ||||||| ||| | ||||| Sbjct 24622 TGGTAGTTATATTGCCGGTACGAATGGATTTTCTAATGGCTTGGTTCCTATGTTACGTGT 24563 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 | | ||||| || | || || || || ||||| || || || || ||||| Sbjct 24562 ATACAATAATACGGCTCGATATGTTGATCAAGGTGGCAACAAACGTCCTGGAGCATTTGC 24503 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 || ||||| || || ||| | ||||| ||||| ||| | | || || ||||| || Sbjct 24502 CATCTATCTAGAACCATGGCATTCGGATATCTTTGATTTTATAAATCTTCGTAAAAATAC 24443 Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968 ||| || ||||| |||||||||||| | || ||||| |||||| || |||| || Sbjct 24442 CGGATCCGAAGAATTACGTGCACGTGATTTATTTTATGCCCTTTGGATTCCTGATTTATT 24383 Query 363969 TATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 ||||| || ||||| || | | |||||| | | || || | || ||||| || Sbjct 24382 CATGAAACGTGTGGATCAAGATGCAATGTGGTCATTGATGTGTCCGAATGAGTGTCCTGG 24323 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGG 364088 | | ||| |||||||| || | || ||||| ||| | |||||| || Sbjct 24322 ATTATTTGATTGTTGGGGTGAAGAATTTGAAAAGCTATATGAACATTATGAAAATGA--A 24265 Query 364089 AAAGG--CTCGTAAGACAAT-TCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 ||| | ||| | ||||| || || | | || |||||| |||| || || || || Sbjct 24264 AAACGATATCG-ATCACAATGTCGTGCTCGTGATCTTTGGTTTTCCATTATTGAATCACA 24206 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 || || || || ||||| |||||| | || || ||| || || || || || || || Sbjct 24205 AATCGAAACTGGCACACCGTATATGGTTTATAAGGATCATTGTAATCGTAAATCAAATCA 24146 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCG 364264 || | |||||||||| ||| | | || || ||||| |||||| | ||||| | Sbjct 24145 ACAAAATCTTGGTACAA-TCAAATGTTCTAATCTTTGTACGGAGATTGTGGAATATTCAT 24087 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 || || || | ||| || ||||| | || ||||| || Sbjct 24086 CTAAAGATGAAATTGCTGTCTGTAATTTAGCCTCGATTGC 24047 Score = 84.2 bits (92), Expect = 6e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 ||| || ||||| || ||||| || ||||| || || || ||||| || | || ||||| Sbjct 23596 AGCTCCAATGCCTACAGCTTCGACAGCACAAATTCTTGGGAACAATGAATCTTTTGAACC 23537 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | |||||| ||| | || || | || ||||||||||||||||||| ||| Sbjct 23536 ATATACAAGTAATATATACACAAGACGTGTTCTTTCCGGAGAATTTCAGGT 23486 >seq1705 Length=717327 Score = 190 bits (210), Expect = 5e-43 Identities = 330/473 (70%), Gaps = 9/473 (2%) Strand=Plus/Minus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 ||||||| |||||| | ||||||||||| | |||||||| || || |||||||| ||| Sbjct 625900 CATTCGCTGAACGTTTGATTGCATTTGCAGCCGTTGAAGGAATCTTTTTTTCTGGTTCAT 625841 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 || ||||| |||||||| |||||||||| | ||||| ||||| || ||||| |||| Sbjct 625840 TTGCCGCAATTTTTTGGCTTAAAAAACGTGGCCTCATGCCTGGTCTTACATTTTCGAATG 625781 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 | || ||| || ||||| || | ||| |||||||| ||||| ||| | || Sbjct 625780 AATTGATTTCACGTGATGAAGGATTACATTGTGATTTTGC----ATGCT-TAT-TGTTTC 625727 Query 22661 ATATCATTCATAAACTTCCAT-ATGA-AAC-TGTACTTGATATTATTACAAATGCAGTTG 22717 | |||| ||| | ||||| | | ||| | |||||||||||| |||| || Sbjct 625726 ACCATATTCGTAATCGTCCATCACCACAACGAATTGTTGATATTATTATCGATGCTGTAT 625667 Query 22718 AACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCG 22777 |||||| ||| | ||| || |||||||| | ||||| || ||| | Sbjct 625666 CGATTGAACAGGAATTCTTGACCGATGCATTACCAGTTTCATTGATTGGCATGAATTCAA 625607 Query 22778 AATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG 22837 ||| |||| |||||| ||| | |||||||||| |||| | | | || || Sbjct 625606 AATTAATGTCCGATTATATTGAATATTGTGCAGATCGTTTATTGGTAGAATTGAATTGTG 625547 Query 22838 CAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAA 22897 ||| |||||||| | ||||||||||||| ||||||| |||||| | ||||| | Sbjct 625546 AAAAACATTATAAAACGGCCAATCCATTTGAATTTATGGAACAAATTTCATTGGAAGGTA 625487 Query 22898 AGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 | | ||||| ||||||||| | |||| ||||| |||||| ||||| ||| Sbjct 625486 AATCAAATTTTTTCGAAAAACGTGTTGCCGAATATCAAAAAAGTGGTGTCATG 625434 >seq1179 Length=350002 Score = 143 bits (158), Expect = 7e-29 Identities = 585/906 (65%), Gaps = 42/906 (5%) Strand=Plus/Plus Query 363591 TCCACAGATGTCTTCTTGCTTTCTTCTAAA-AATGAAGGACGATTCCATCGAGGGTATCT 363649 |||||| ||||| ||||| |||||| | | |||| || ||| ||| || || |||| Sbjct 61660 TCCACAAATGTCATCTTG-TTTCTTATTGACAATGGGCGATGATAGCATTGAAGGCATCT 61718 Query 363650 TTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGA 363709 ||| ||| | || | ||||| ||||||| || ||| || || ||||| | Sbjct 61719 ATGATACATTGAAACAATGTGCAATTATTTCGAAATCTGCCGGTGGTATTGGCCTTAATG 61778 Query 363710 TCCACAATGTTCGTGCACA--GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGG 363767 | || | ||||| |||| | || || ||| || || || | || ||||| Sbjct 61779 TTCATTGTATTCGTTCACATGGTTCA--TATATTGCTGGTACGAATGGTTTTTCCAATGG 61836 Query 363768 GCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGG 363827 | || || ||| | ||||| || | || ||||| | || || || || ||||| || Sbjct 61837 TTTAGTACCAATGTTACGTGTATTCAATAACACTGCACGTTATGTGGATCAAGGTGGTGG 61896 Query 363828 AAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTT 363887 ||| || ||| || |||||||| ||| | ||||| ||||| |||||||||| || Sbjct 61897 AAAACGTCCAGGTGCATTTGCTATCTATTTGGAGCCATGGCATGCAGATATTTTTGCCTT 61956 Query 363888 TCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGC 363947 | | || || || || || || || || | ||||||||||| || |||||||| Sbjct 61957 TTTGGATCTAAAAAAGAATACTGGTTCCGAAGAGCTACGTGCACGTGACCTATTCTATGC 62016 Query 363948 ACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA---GGCAGGTAAGAATTGGTCACT 364004 | | ||| | | || |||||||| || || || || |||| | |||||| | Sbjct 62017 ATTGTGGATACCGGATTTGTTTATGAAACGTGTTGAAATGGATGGTATG---TGGTCATT 62073 Query 364005 CTTTTGCCCACACGAATGTCCAGGTCTTTCCG-ATGTATGGGGTGACGACTATGTTGCTC 364063 | || ||| | |||||||| || ||| | |||| |||||||| || | | | Sbjct 62074 GATGTGTCCAAATGAATGTCCCGGACTTCATGAATGT-TGGGGTGAAGAATTCGAAAAGC 62132 Query 364064 TATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA-----GACAA-TTCCCGCACAGA 364117 |||| ||| | ||||| | | ||| | |||| | |||| | ||||| Sbjct 62133 TATATGAACAATATGA----GCGTGAA--GGTCGTTATCGGTCACAAGTGAAAGCACATG 62186 Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 | ||||||||||||| ||||| | || ||||| || || || || || ||| | || | Sbjct 62187 ATTTATGGTTTGCCATTTTGGATGCACAAATTGAAACTGGTACTCCATACATGGTATATA 62246 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AAC 364236 ||||| || || || || || || || || | | || || | ||| | | || Sbjct 62247 AAGATCATTGTAATCGTAAATCAAATCAACAAAATTTGGGAACCA-TCAAATGTTCAAAT 62305 Query 364237 CTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCG 364296 || ||||| || ||| ||||||| | | | || || | |||||| ||||| | || Sbjct 62306 CTTTGTACGGAAATTGTTGAATATTCATCAGCTGATGAAATTGCCGTTTGTAATTTGGCT 62365 Query 364297 TCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCACCAGCATCTT 364350 || || | | || ||||| ||| | ||| ||||| | | | || Sbjct 62366 TCAATTTCATTGCCACGTTTTGTCGATCCAAAGCTTTTTACATTTGATTATGATAAACTC 62425 Query 364351 TATGA----CGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTA 364406 | || ||| || ||| || ||| | |||| ||||||| | |||| Sbjct 62426 AAAGAAATTGTTAAAGTA--ATG--ACAAAAAATTTGAACAAAATTATCGATAGTAATTT 62481 Query 364407 TTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGT 364466 ||||||| | || ||||| | ||||| ||| | |||||||| |||||||| ||||||| Sbjct 62482 TTATCCATTACCGGAAGCGAAACGTTCGAATCTACGTCATCGACCGATTGGAATTGGTGT 62541 Query 364467 ACAGGG 364472 ||| || Sbjct 62542 ACAAGG 62547 >seq206 Length=237414 Score = 116 bits (128), Expect = 1e-20 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 111325 TCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCG 111384 |||| ||||| || || |||| || |||||||||| ||||| |||||| | | | Sbjct 142192 TCACTACAAAACGTGTATTTTGGCGTGGTGTTGTCGAAGAGCTTCTATGGTTTCTACAAG 142133 Query 111385 GAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGAT 111444 || || | | || | || | | |||| ||||||||| ||||||| |||||||| Sbjct 142132 GATCAACTGACTCGAAAAAGCTGTCTGAAAAAGGTGTAAAAATCTGGGATGCAAATGGAT 142073 Query 111445 CACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAG 111504 |||| || ||||| ||| |||| ||| ||| ||||||||||||| || |||| Sbjct 142072 CACGAGAATTTCTCGATAGCCTTGGGTTTGCCGATCGTCAAGAAGGTGATCTAGGTCCAG 142013 Query 111505 TTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 | || || ||||||||| | || |||||||| || || Sbjct 142012 TATATGGTTTTCAATGGAGACATTTTGGTGCCGAATA 141976 >seq904 Length=495971 Score = 107 bits (118), Expect = 5e-18 Identities = 177/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 145533 AAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTC-TTCGTC 145591 ||||||||||| |||||||| || || ||||| || | |||||| || | || ||| | Sbjct 465425 AAATCTTCATCGGAAAATCCTGTGCCAATCTTACAAATACTTTGAAATTCATCATTCTTA 465484 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 | |||||| |||||||| | ||||||| | || || | ||| || || || Sbjct 465485 T-CATCATAACAGGCAAGAAGAAAACCACCATAAAAGCCGGTTCTTTTGCCACGTCCATA 465543 Query 145652 ATACCCCGCAATTGGTACAAGATCACAAC-TATCACCCATTCCGGCAAGATAATCCTTTT 145710 ||| | |||| |||| | ||| |||| ||||||| | || | | |||||| || | Sbjct 465544 ATATGCTCCAATCGGTATTAAATC-CAACGTATCACCAGTGCCTTCTAAATAATCTTTCT 465602 Query 145711 TAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATG 145770 ||||||| ||||| || | |||||||| | | ||||||||| | | | | ||||| Sbjct 465603 TAAGTTTAAGCCATTTAAATGAACGTTTGGCTATTTCATAGCTTGCATCTTTATGCAATG 465662 Query 145771 ATTTTACCAT 145780 ||||||||| Sbjct 465663 TTTTTACCAT 465672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303325111134092