Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1705 113 4e-20 seq1658 113 4e-20 seq1489 113 4e-20 >seq1705 Length=717327 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| | || || || || ||||| | ||| || ||| | Sbjct 501973 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGA-ACCATC 502031 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 502032 GGACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCA 502091 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| || | |||| ||| || |||||| | ||||||| | || | | |||||||| Sbjct 502092 GCAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAA 502151 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| |||||||| |||||| | ||| | || ||| Sbjct 502152 CATCCAAAAAGAATCTACTCTCCATCTTGTCTTG 502185 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || | || || ||||| ||||| | ||| ||| ||| | Sbjct 502429 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAG-CCATC 502487 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 502488 AGATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCA 502547 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || ||||| || ||||||| | |||| || ||||| || Sbjct 502548 GCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAA 502607 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 ||| |||||||| || ||| | ||| | ||||| Sbjct 502608 CATCCAAAAAGAATCCACTCTCCATCTTGTGTT 502640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| | || || ||||||||||| | ||| ||| ||| Sbjct 501744 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGA-ACCAT 501802 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||||| ||| | | || ||| ||||| ||||||||||| |||| || | Sbjct 501803 CTGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACC 501862 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||| || | || | ||| || || ||||| || |||| ||| || ||||||| | Sbjct 501863 AGCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACA 501922 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| ||||| || || || Sbjct 501923 ACATCCAAAAGGAATCCAC 501941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| | || || || |||||||| | ||| ||| | | Sbjct 502201 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 502260 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || ||| |||||| || |||||||| |||| |||||| Sbjct 502261 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 502320 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || ||||| || ||||||| | ||| || |||||||| Sbjct 502321 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAAT 502380 Query 115466 ATTCAAAAAGAGTCTAC 115482 || |||||||| || || Sbjct 502381 ATCCAAAAAGAATCCAC 502397 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 |||||||||||| | || | ||| || |||||||| ||||||| | || || ||||| Sbjct 501331 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACATTGTCCGAT 501390 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||||||||| || || | ||| |||| Sbjct 501391 TATAACATTCAAAAAGAATCGACATTGCATTTGGT 501425 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||||||| | | || | ||| ||||||||||||||||||| ||| || ||||| Sbjct 501631 GATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGAT 501690 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| |||||||| || ||||| | ||| |||| ||| | | || || |||| Sbjct 501691 TATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGAA 501745 >seq1658 Length=21299 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| | || || ||||||||||| | ||| ||| ||| | Sbjct 17634 ATGCAAATTTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAG-CCATC 17692 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | || ||| ||||| || |||||||| | || ||||| Sbjct 17693 AGATACCATTGAAAACGTGAAAGCTAAAATCCAGGACAAAGAAGGAATTCCACCAGATCA 17752 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | |||| ||| || |||||||| ||||||| || ||| || |||||||| Sbjct 17753 ACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATAA 17812 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || |||||||| |||||| | ||| | |||||| Sbjct 17813 TATCCAAAAAGAATCTACTCTCCATCTTGTGTTG 17846 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||||||||| | || || ||||||||||| | ||| ||| ||| Sbjct 17176 AATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGA-ACCAT 17234 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||||| ||| | | || ||| ||||| || |||||||| |||| |||| Sbjct 17235 CGGACACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATC 17294 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||| | | || | ||| || || ||||| || |||| ||| || | ||||| | Sbjct 17295 AGCAACGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTACA 17354 Query 115464 ACATTCAAAAAGAGTCTAC 115482 ||||||||||||| || || Sbjct 17355 ACATTCAAAAAGAATCCAC 17373 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || | || || ||||| ||||| | ||| ||| ||| | Sbjct 17862 ATGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAG-CCATC 17920 Query 115346 -GACACTGTTGGACAAGT-AAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || | | | | || |||| |||||| ||||||||||| |||| |||| Sbjct 17921 AGATACAATCGAAAATGTGAAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATC 17980 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | |||| ||| || ||||| || ||||||| | |||| || ||||| | Sbjct 17981 AGCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACA 18040 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||||||| || ||| | ||| | |||||| Sbjct 18041 ACATCCAAAAAGAATCCACTCTCCATCTTGTGTTG 18075 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||||||| | | || | ||| ||||||||||||||||||| ||| || ||||| Sbjct 17063 GATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGAT 17122 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| ||||| | ||| |||| ||| | | || || |||| Sbjct 17123 TACAATATTCAAAAAGAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGAA 17177 >seq1489 Length=23360 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| | || || || || ||||| | ||| || ||| | Sbjct 6016 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAA-CCATC 5958 Query 115346 G-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 | |||| ||| | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 5957 GGACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCA 5898 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| || | |||| ||| || |||||| | ||||||| | || | | |||||||| Sbjct 5897 GCAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAA 5838 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| |||||||| |||||| | ||| | || ||| Sbjct 5837 CATCCAAAAAGAATCTACTCTCCATCTTGTCTTG 5804 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || | || || ||||| ||||| | ||| ||| ||| | Sbjct 5560 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAG-CCATC 5502 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 5501 AGATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCA 5442 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || ||||| || ||||||| | |||| || ||||| || Sbjct 5441 GCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAA 5382 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 ||| |||||||| || ||| | ||| | ||||| Sbjct 5381 CATCCAAAAAGAATCCACTCTCCATCTTGTGTT 5349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| | || || || |||||||| | ||| ||| | | Sbjct 5788 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 5729 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || ||| |||||| || |||||||| |||| |||||| Sbjct 5728 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 5669 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || ||||| || ||||||| | ||| || |||||||| Sbjct 5668 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAAT 5609 Query 115466 ATTCAAAAAGAGTCTAC 115482 || |||||||| || || Sbjct 5608 ATCCAAAAAGAATCCAC 5592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| | || || ||||||||||| | ||| ||| ||| Sbjct 6245 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAA-CCAT 6187 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||||| ||| | | || ||| ||||| ||||||||||| |||| || | Sbjct 6186 CTGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACC 6127 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||| || | || | ||| || || ||||| || |||| ||| || ||||||| | Sbjct 6126 AGCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACA 6067 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| ||||| || || || Sbjct 6066 ACATCCAAAAGGAATCCAC 6048 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||||||| | | || | ||| ||||||||||||||||||| ||| || ||||| Sbjct 6358 GATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGAT 6299 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| |||||||| || ||||| | ||| |||| ||| | | || || |||| Sbjct 6298 TATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGAA 6244 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 |||||||||||| | || | ||| || |||||||| ||||||| | || || ||||| Sbjct 6658 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACATTGTCCGAT 6599 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||||||||| || || | ||| |||| Sbjct 6598 TATAACATTCAAAAAGAATCGACATTGCATTTGGT 6564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425335156300720