Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1658 86.0 5e-12 seq1705 84.2 2e-11 seq1489 84.2 2e-11 >seq1658 Length=21299 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| | ||| | ||| || ||||| || ||||| |||||||| || | | Sbjct 17403 CCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGAC 17344 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||||||| || || ||| | || | ||| || || || || Sbjct 17343 AAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 17284 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || ||| || || | | | |||||| || ||| Sbjct 17283 ATACCTTCTTTGTCTTGGATTTTAGCT--TTGACATTTTCAATAGTGTCCGATGGTTCCA 17226 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || |||||||| || || | |||||||||||||| |||||| Sbjct 17225 CTTCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCATT 17176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||| | ||| || ||||| || || || |||||||| |||| | Sbjct 18317 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 18258 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||||||||| || ||| |||| | ||| || || || || Sbjct 18257 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 18198 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| || || | | | || || || ||| Sbjct 18197 ATACCTTCTTTGTCTTGAATTTTAGCT--TTTACATTTTCAATGGTATCCGATGGTTCCA 18140 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| ||||| || |||| ||||| || || || ||||| Sbjct 18139 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 >seq1705 Length=717327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||| | ||| || ||||| || || || |||||||| |||| | Sbjct 502883 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 502824 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||||||||| || ||| |||| | ||| || || || || Sbjct 502823 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 502764 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| || || | | | || || || ||| Sbjct 502763 ATACCTTCTTTGTCTTGAATTTTAGCT--TTTACATTTTCAATGGTATCCGATGGTTCCA 502706 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| ||||| || |||| ||||| || || || ||||| Sbjct 502705 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||| | ||| || ||||| |||||||| |||||||| |||| || ||| | ||||| Sbjct 501954 TACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTC 501895 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--G 16843 |||||| || || ||| | || | || || ||||| || | || ||||| || | Sbjct 501894 CAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTG 501835 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 | || ||| || || | | | |||||| || ||| ||||| || |||||| Sbjct 501834 GATTTTAGCT--TTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTT 501777 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || |||| ||||| || ||||| |||||| Sbjct 501776 TTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 >seq1489 Length=23360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||| | ||| || ||||| || || || |||||||| |||| | Sbjct 5106 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 5165 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||||||||| || ||| |||| | ||| || || || || Sbjct 5166 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 5225 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| || || | | | || || || ||| Sbjct 5226 ATACCTTCTTTGTCTTGAATTTTAGCT--TTTACATTTTCAATGGTATCCGATGGTTCCA 5283 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| ||||| || |||| ||||| || || || ||||| Sbjct 5284 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||| | ||| || ||||| |||||||| |||||||| |||| || ||| | ||||| Sbjct 6035 TACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTC 6094 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--G 16843 |||||| || || ||| | || | || || ||||| || | || ||||| || | Sbjct 6095 CAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTG 6154 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 | || ||| || || | | | |||||| || ||| ||||| || |||||| Sbjct 6155 GATTTTAGCT--TTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTT 6212 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || |||| ||||| || ||||| |||||| Sbjct 6213 TTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405079577460940