Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1705 365 5e-96 >seq1705 Length=717327 Score = 365 bits (404), Expect = 5e-96 Identities = 638/912 (70%), Gaps = 20/912 (2%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||||| |||||| ||||| |||| |||||| || ||||||| || ||||| Sbjct 625434 CATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTC 625493 Query 92850 CAAAGATATCGAATTCACTAGTG--ATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| || || | || | | | |||||| | ||||||| ||||||| | Sbjct 625494 CAATGAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAATT 625553 Query 92908 CAACTCGTACAATAATCTATCAGCTACAA-ATTCTATGTACTGAGACATCAAATCACAAT 92966 ||| || |||||| | ||| || |||| |||| || || | ||||| || | ||| Sbjct 625554 CAATTCTACCAATAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGAAT 625612 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||| || | | || |||| || ||||||||||| || | || || || | Sbjct 625613 TCATGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACAG 625672 Query 93027 CTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTG--TACGACATAATTGT- 93083 | || | | || || | | || | ||||| | | ||||| ||| | || Sbjct 625673 CATCGATAATAATATCAACAATTCGT---TGTGGTGATGGACGATTACGA-ATA-TGGTG 625727 Query 93084 --ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||| |||||| ||||| || |||||| ||||| || ||||| ||||| ||||| Sbjct 625728 AAACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGA 625787 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||||| | ||| || | || || ||||| || |||||||| |||| ||||| ||| Sbjct 625788 AAATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACC 625847 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 ||||||||| || ||||| |||||||||||||| | | |||||| || || | | || Sbjct 625848 AGAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGA 625907 Query 93262 ATTACTGCTGA-TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | | ||| |||| || |||||| | |||||||| | | |||||||| || Sbjct 625908 ATCA-TCCTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAA-TTA 625965 Query 93321 CG-ATAGCGTTAAATAGGTAATCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAA 93378 || || || || ||||| ||||| | || | ||| || || ||||||| ||| || Sbjct 625966 CGTATGGCATTGAATAGAAAATCTTGTTCACTACGA-TCCGATACATATGTATTGATCAA 626024 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 | ||||||||||| ||||| ||||| || || |||||||| || || || ||||| | Sbjct 626025 TAATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACG 626084 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||||| | || || || || || ||| | || | |||||||||||||| ||||| Sbjct 626085 TGCTTCTGGTATTTGTACATCACGAATAAAACGTTCGGCCAGATTTTCATTGACAATACC 626144 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 |||| ||| |||||||| ||||||| ||| | || |||||||| |||| | || | Sbjct 626145 ATCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTCAA 626204 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 | || ||||| || | ||| ||||| |||||||| || ||||| || ||||| Sbjct 626205 TTGATTCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGATGC 626264 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 ||| |||||||| ||||| ||| ||||| ||||||||||||||||| | |||||||| Sbjct 626265 TTCAGCTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAACAAAACAAAACG 626324 Query 93679 ATTAGGGTTATC 93690 ||| || || || Sbjct 626325 ATTTGGATTTTC 626336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556848924943440