Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1705 105 5e-18 seq1489 105 5e-18 seq1658 98.7 7e-16 >seq1705 Length=717327 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | |||||||| || || ||||||||||| ||||| |||| | | Sbjct 501744 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 501803 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| |||||||| ||| | || | |||| Sbjct 501804 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 501863 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | ||||||||||| || ||| | || ||| |||| || |||||||||| Sbjct 501864 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 501923 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || || |||||||| || |||||| | |||||||| Sbjct 501924 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACG 501959 Score = 98.7 bits (108), Expect = 7e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 21963 ATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAG 22022 |||||||||||||||||| |||||||| |||| || ||||||| |||||||| ||| Sbjct 501646 ATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGATTATAATATTCAAAAG 501705 Query 22023 GAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| | ||| ||||||| ||| |||| || ||| Sbjct 501706 GAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGA 501744 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || || || ||||| ||||| ||| | | Sbjct 501973 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCG 502032 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || |||||| |||||||| ||| | || | | || Sbjct 502033 GACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAG 502092 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| |||||||| |||||| || | | ||||| || Sbjct 502093 CAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAAC 502152 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||||||||| ||| | || || ||| |||| || || Sbjct 502153 ATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 502199 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| | ||||| || || || ||||| || ||| ||||| |||| | | Sbjct 502657 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 502716 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || ||||| ||| | || | | || Sbjct 502717 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 502776 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || ||||| || |||||| | |||||| ||| || |||||||||| Sbjct 502777 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 502836 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAAT 22071 |||||||| ||||| || || ||| | ||| | || | || || ||| | ||| ||| Sbjct 502837 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGGAAACTAAAAAT 502894 >seq1489 Length=23360 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | |||||||| || || ||||||||||| ||||| |||| | | Sbjct 6245 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 6186 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| |||||||| ||| | || | |||| Sbjct 6185 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 6126 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | ||||||||||| || ||| | || ||| |||| || |||||||||| Sbjct 6125 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 6066 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || || |||||||| || |||||| | |||||||| Sbjct 6065 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACG 6030 Score = 98.7 bits (108), Expect = 7e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 21963 ATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAG 22022 |||||||||||||||||| |||||||| |||| || ||||||| |||||||| ||| Sbjct 6343 ATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGATTATAATATTCAAAAG 6284 Query 22023 GAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| | ||| ||||||| ||| |||| || ||| Sbjct 6283 GAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGA 6245 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || || || ||||| ||||| ||| | | Sbjct 6016 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCG 5957 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || |||||| |||||||| ||| | || | | || Sbjct 5956 GACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAG 5897 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| |||||||| |||||| || | | ||||| || Sbjct 5896 CAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAAC 5837 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||||||||| ||| | || || ||| |||| || || Sbjct 5836 ATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 5790 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| | ||||| || || || ||||| || ||| ||||| |||| | | Sbjct 5332 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 5273 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || ||||| ||| | || | | || Sbjct 5272 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 5213 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || ||||| || |||||| | |||||| ||| || |||||||||| Sbjct 5212 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 5153 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAAT 22071 |||||||| ||||| || || ||| | ||| | || | || || ||| | ||| ||| Sbjct 5152 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGGAAACTAAAAAT 5095 >seq1658 Length=21299 Score = 98.7 bits (108), Expect = 7e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 21963 ATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAG 22022 |||||||||||||||||| |||||||| |||| || |||||||||||||||| || Sbjct 17078 ATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGATTACAATATTCAAAAA 17137 Query 22023 GAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| | ||| ||||||| ||| |||| || ||| Sbjct 17138 GAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGA 17176 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| ||||| || ||||||||||| ||||| |||| | | Sbjct 17176 AATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATC 17235 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| || ||||| ||| | || | | || Sbjct 17236 GGACACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 17295 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || | | |||||||| || || ||| | || ||| |||| || | |||||||| Sbjct 17296 GCAACGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTACAA 17355 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||| || ||||| || |||||| | |||||||| Sbjct 17356 CATTCAAAAAGAATCCACCCTTCATCTTGTATTACG 17391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 21837 CAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCAGAA 21896 ||||| ||| | ||||| ||||| || || || ||||| ||||| ||| | | || Sbjct 17409 CAAATCTTTGTCAAAACCTTAACTGGTAAGACTATTACACTGGAAGTCGAACCATCGGAC 17468 Query 21897 ACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAG 21956 ||| | | || | || |||||| |||||||||||| | || | | || || Sbjct 17469 ACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAGGGTATTCCACCAGATCAGCAA 17528 Query 21957 AGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATT 22016 || | || |||||||| |||||||| |||||| || | | || || || || Sbjct 17529 CGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGACTATAACATC 17588 Query 22017 CAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||| ||| | || |||||| |||| || || Sbjct 17589 CAAAAGGAATCCACTCTCCATCTTGTCTTACGTCTACGTGGTGG 17632 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| | ||||| || || || ||||| || ||| ||||| |||| | | Sbjct 18091 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 18150 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || ||||| ||| | || | | || Sbjct 18151 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 18210 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || ||||| || |||||| | |||||| ||| || |||||||||| Sbjct 18211 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 18270 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAAT 22071 |||||||| ||||| || || ||| | ||| | || | || || ||| | ||| ||| Sbjct 18271 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGGAAACTAAAAAT 18328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358117353913924