Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1705 129 1e-24 seq1489 129 1e-24 seq1658 125 2e-23 >seq1705 Length=717327 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || || | |||| || ||||| | ||| |||||||||||||||||| || Sbjct 502427 CCACCACGTAGACGTAAG-ACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACT 502369 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| || ||||| || || ||||||| || || ||| ||| Sbjct 502368 CAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGG 502309 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||| ||||| ||||| |||||||| ||||| || | |||| | || || Sbjct 502308 GATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGAC 502249 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| ||||||| || ||||| || || ||||| Sbjct 502248 TTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | ||||||||||| ||| ||| |||||||| || || |||| Sbjct 501971 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 501912 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || ||||| ||||| || ||||||| || || || |||| Sbjct 501911 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 501852 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| |||||||| ||||| || ||||| |||| || | ||| ||| Sbjct 501851 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACT 501792 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || || || || |||| || || ||||| || |||||| Sbjct 501791 TCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || ||||| | ||| |||||||||||| || || || Sbjct 502655 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 502596 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| || ||||| || || || |||| ||||| ||| |||| Sbjct 502595 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 502536 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || ||||| |||||||| ||||| || | ||| | || ||| Sbjct 502535 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 502476 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || |||| |||||||||||| || ||||| Sbjct 502475 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| ||||| || | | || || || ||||| | |||||| || || || Sbjct 502164 TTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAA 502105 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| || || ||| |||||| ||||||||||| |||||||| |||||||| || Sbjct 502104 AATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATT 502045 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | || || ||||| || || | || ||||| Sbjct 502044 TTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGAC 501985 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 501984 AAAAATTTGCAT 501973 >seq1489 Length=23360 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || || | |||| || ||||| | ||| |||||||||||||||||| || Sbjct 5562 CCACCACGTAGACGTAAG-ACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACT 5620 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| || ||||| || || ||||||| || || ||| ||| Sbjct 5621 CAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGG 5680 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||| ||||| ||||| |||||||| ||||| || | |||| | || || Sbjct 5681 GATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGAC 5740 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| ||||||| || ||||| || || ||||| Sbjct 5741 TTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | ||||||||||| ||| ||| |||||||| || || |||| Sbjct 6018 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 6077 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || ||||| ||||| || ||||||| || || || |||| Sbjct 6078 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 6137 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| |||||||| ||||| || ||||| |||| || | ||| ||| Sbjct 6138 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACT 6197 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || || || || |||| || || ||||| || |||||| Sbjct 6198 TCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || ||||| | ||| |||||||||||| || || || Sbjct 5334 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 5393 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| || ||||| || || || |||| ||||| ||| |||| Sbjct 5394 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 5453 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || ||||| |||||||| ||||| || | ||| | || ||| Sbjct 5454 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 5513 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || |||| |||||||||||| || ||||| Sbjct 5514 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| ||||| || | | || || || ||||| | |||||| || || || Sbjct 5825 TTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAA 5884 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| || || ||| |||||| ||||||||||| |||||||| |||||||| || Sbjct 5885 AATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATT 5944 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | || || ||||| || || | || ||||| Sbjct 5945 TTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGAC 6004 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 6005 AAAAATTTGCAT 6016 >seq1658 Length=21299 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||||||||| || | || | || ||||| |||||||| || || || Sbjct 17825 TTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCTTCCAATTGTTTACCGGCAAA 17766 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||| ||||||||||| ||||||||||| ||||||||||| Sbjct 17765 AATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTT 17706 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || ||||| | || || || || ||||||| || ||||| Sbjct 17705 TTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGAC 17646 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 17645 AAAAATTTGCAT 17634 Score = 120 bits (132), Expect = 7e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || ||||| | ||| |||||||||||| || || || Sbjct 18089 CCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 18030 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| || ||||| || || || |||| ||||| ||| |||| Sbjct 18029 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 17970 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGC-TTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || ||||| || |||||| ||||| || | ||| | || || Sbjct 17969 ATTCCTTCTTTATCTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAAC 17910 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || || || || |||| ||||||||||||||| ||||| Sbjct 17909 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628614966668