Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1179 149 7e-31 seq659 87.8 2e-12 >seq1179 Length=350002 Score = 149 bits (164), Expect = 7e-31 Identities = 451/686 (66%), Gaps = 18/686 (3%) Strand=Plus/Minus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 || ||||| ||||| | ||||| || || || ||||| || || || ||||| ||||| Sbjct 62889 GTATATGGTTCAAATGATTCATTATTGCCTAAAATTTGTGCTGTAGATGCTGTTGGCATT 62830 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 ||||| | || | || || || | ||| |||| ||| | | || | | | | Sbjct 62829 GGTGCAACAAGTAAACTATTTCGTATACCATTTTGAGCAATTTTTGCTTTCAATTCATTC 62770 Query 114074 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 114131 || || | | | || || || | | | |||||||||| | || || ||||||| | Sbjct 62769 CAATCCCAAAGATCAG-TTGGTGTGCGGTT-CCACATATCATATTGTAGAATACCTTTCG 62712 Query 114132 AGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 114191 | |||| ||||| ||| |||| || |||||||| || |||||||| | || | Sbjct 62711 ATACTGGTGATCCTTCATATGTTTCATATGGGCCAAATTTTTCAGCCAATTCACAACTTG 62652 Query 114192 CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 114251 | || | || | | ||| ||||| ||||| || || ||||||| || || ||| Sbjct 62651 CTTCCAATGCACCATAATAAATTGTTTCAAATATTTGAATATTCATTTGTTTAGCTTCGA 62592 Query 114252 CGGAATCAAACGCGAGTCGGCACAAAATA-AATACATCCGCGAGACCTTGGACACCGAGG 114310 ||| | | || ||| || | ||| |||| || | |||||| ||||| | Sbjct 62591 GACTTTCATATG-GATAACGCATTAAGTTGAATGCATCGGCTAAACCTTGTACACCAATT 62533 Query 114311 CCAATTGGGCGATGTCTCATATTAGAC--TTTCGAG--CGGTCTCCACGGGATAAAAATT 114366 ||||| || ||||| | | ||| || ||||| |||| | ||||||||||| Sbjct 62532 CCAATCGGTCGATGACGTAGATTCGAACGTTTCGCTTCCGGT----AATGGATAAAAATT 62477 Query 114367 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 114426 |||||||||| | || | |||||| || | || || ||||| | || || || Sbjct 62476 ACTATCGATAATTTTGTTCAAATTTTTTGTCATTACTTTAACAATTTCTTTGAGTTTATC 62417 Query 114427 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 114486 |||||||| | | || | || |||| | || | | ||||| |||| ||| Sbjct 62416 ATAATCAAATGTAAAAAGCTTTGGATCGACAAAACGTGGCAATGAAATTGAAGCCAAATT 62357 Query 114487 ACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 ||| || | | ||||| || || | | | || | |||||||||||| | ||||||| Sbjct 62356 ACAAACGGCAATTTCATCAGCTGATGAATAT--TCAACAATTTCCGTACAAAGATTTGAA 62299 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 | || ||||| ||||| || | ||||||||| || ||||| ||| || || | | Sbjct 62298 CATTTGATGGTTCCCAAATTTTGTTGATTTGATTTACGATTACAATGATCTTTATATACC 62239 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTG 114630 |||||||| || || || || |||| Sbjct 62238 ATGTATGGAGTACCAGTTTCAATTTG 62213 >seq659 Length=572639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 264/405 (65%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| || ||||| || | || || || | ||||| ||||| || || || || || Sbjct 248148 CGATCGAAACGACCCGGCCTTAGCAGTGCTTTATCAAGAATATCTATACGATTAGTAGCG 248207 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || | ||||||| | | ||| ||| |||||||| || ||| | |||||| Sbjct 248208 GCCAATACAACGACATTGGAAGCCGTATTAAAACCATCCATTTCGACCAATAATTGATTC 248267 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACG 10966 | || | ||| |||| || | ||| | ||| |||| ||| ||| Sbjct 248268 AATGTATTTTCCTGTTCGCTATGGCCACCTATATTGCGACCACCACGTTTACGACCAACG 248327 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 11026 || ||||||||||| || || | || || || ||||| ||| || | | |||| ||| Sbjct 248328 GCATCAATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 248387 Query 11027 TCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGA-ACA 11085 ||||| || | | ||| ||||| ||||||||||| | ||| | | | | || || Sbjct 248388 TCTCGAACACGTGAAGGACCAACACCGACAAACATTTCGAGAAACTCTGAGCCAGATACG 248447 Query 11086 TTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 11145 | |||||| || || || | |||||| || | ||| || | || || || || || Sbjct 248448 GT-GATGAAAGGCACTTTAGCTTCACCAGCTGTAGCTTTAGCTAATAGAGTTTTACCAGT 248506 Query 11146 CCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 || ||| || | ||||||||||| ||| ||| | ||||| Sbjct 248507 ACCTGGTGGTCCAGTTAGAAGGGCACCTTTTGGAATCTTAGCACC 248551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597340861434480