Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1705 107 2e-18 seq1658 107 2e-18 seq1489 107 2e-18 >seq1705 Length=717327 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || || || ||||||||||| ||| || |||||| Sbjct 502871 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 502812 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||||||||||| | | || | || || || || || || |||||||||||| Sbjct 502811 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 502752 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | ||| | ||| || | | ||||| || | || | Sbjct 502751 TCT-TGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGAT 502693 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| ||||||||| || || ||||| Sbjct 502692 TGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 || || || | ||| | | | || |||||||| |||||||| ||| || ||| || Sbjct 501959 CGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCA 501900 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| | ||| || || | | |||| | || || ||||| || || ||||||||||| Sbjct 501899 TCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTA 501840 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || |||||| ||| | | ||| | ||||| | | ||||| || | || | Sbjct 501839 TCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATG 501780 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| ||||| || ||||| ||||| Sbjct 501779 GTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || | ||| | | | || || ||||| || || || || ||| Sbjct 502427 CCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTC 502368 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||||||| | |||| | || || || || || || Sbjct 502367 AATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 502308 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| |||| | ||| | | ||| | ||| |||| | ||| || Sbjct 502307 ATACCTTCTTTGTC-CTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGAC 502249 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||||| |||||||| ||||| Sbjct 502248 TTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 >seq1658 Length=21299 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || || || ||||||||||| ||| || |||||| Sbjct 18305 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 18246 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||||||||||| | | || | || || || || || || |||||||||||| Sbjct 18245 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 18186 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | ||| | ||| || | | ||||| || | || | Sbjct 18185 TCT-TGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGAT 18127 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| ||||||||| || || ||||| Sbjct 18126 TGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 || || || | ||| | | | || || |||||||||||||| || || ||| || Sbjct 17391 CGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCA 17332 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| | ||| || |||| | |||| | || || || || || || |||||||||||| Sbjct 17331 TCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 17272 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || |||||| ||| | | ||| | ||||| | | ||||| || | || | Sbjct 17271 TCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATG 17212 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||| | ||||| |||||||| ||||| Sbjct 17211 GTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | || || ||||| || || || || ||| Sbjct 17860 CCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTC 17801 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || | ||||||||||| | | || | ||| ||||| || || || Sbjct 17800 AATGTTCTGCCA-TCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGG 17742 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| |||||| ||| | | ||| | ||| || | | ||| || Sbjct 17741 AATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGAC 17682 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| || |||| ||||| |||||||| |||||| Sbjct 17681 TTCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 >seq1489 Length=23360 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || || || ||||||||||| ||| || |||||| Sbjct 5118 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 5177 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||||||||||| | | || | || || || || || || |||||||||||| Sbjct 5178 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 5237 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | ||| | ||| || | | ||||| || | || | Sbjct 5238 TC-TTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGAT 5296 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| ||||||||| || || ||||| Sbjct 5297 TGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 || || || | ||| | | | || |||||||| |||||||| ||| || ||| || Sbjct 6030 CGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCA 6089 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| | ||| || || | | |||| | || || ||||| || || ||||||||||| Sbjct 6090 TCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTA 6149 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || |||||| ||| | | ||| | ||||| | | ||||| || | || | Sbjct 6150 TCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATG 6209 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| ||||| || ||||| ||||| Sbjct 6210 GTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || | ||| | | | || || ||||| || || || || ||| Sbjct 5562 CCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTC 5621 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||||||| | |||| | || || || || || || Sbjct 5622 AATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 5681 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| |||| | ||| | | ||| | ||| |||| | ||| || Sbjct 5682 ATACCTTCTTTGTC-CTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGAC 5740 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||||| |||||||| ||||| Sbjct 5741 TTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251817204320