Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1705 127 1e-24 seq1658 127 1e-24 seq1489 127 1e-24 >seq1705 Length=717327 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || | ||| ||||| || ||||| || |||||||||||| Sbjct 502883 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 502824 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| |||||||| || || | ||||| || || || || ||| Sbjct 502823 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 502764 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 || ||||| ||||| |||||| ||||||| |||| || ||||| | || ||| || Sbjct 502763 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATC-CGATGGTTCCAC 502705 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || |||||||| |||| ||||||||| || ||||||||| Sbjct 502704 TTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCATA 502656 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || ||| || | ||||||||| || || ||||| |||||||||||| Sbjct 501971 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 501912 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| | || || ||||| || ||||| | ||||| || || ||||| ||| Sbjct 501911 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 501852 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||| ||| ||| |||| ||||| || ||| || Sbjct 501851 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACT 501792 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| |||| ||||| || ||||||||||| Sbjct 501791 TCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || | ||| || || || |||||||| ||||||||||| || Sbjct 502655 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 502596 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | ||| | ||||| || ||||| || || | ||||| ||||| || || ||| Sbjct 502595 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 502536 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||||||| ||| ||| |||| || ||||| || || Sbjct 502535 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 502476 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| |||||||| |||| ||| || || |||||||||||| Sbjct 502475 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 502428 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || | ||| ||||| || |||||||| || || ||||| || Sbjct 502427 CCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTC 502368 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | ||| | ||||| || ||||| || || | ||||| || || || || ||| Sbjct 502367 AATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 502308 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| ||| |||| || |||||| || || Sbjct 502307 ATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACT 502248 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| || || |||| ||||| ||||||||||||||| Sbjct 502247 TCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCATA 502200 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || | ||| || ||||| |||||||| ||||| ||||| || ||| || | | Sbjct 502184 AAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA--GATAATGTACGGCCAT 502127 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | |||||| ||||| | ||||| || || || || ||| || ||||| || | Sbjct 502126 CTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTAT 502067 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTACGTCTAAGGTAATG 15141 | ||||| ||| ||| |||| || || || | || ||| || || || ||||| Sbjct 502066 CTTGGATTTTTGCTTTCACATTTTCAATCGTGTC-CGATGGTTCGACTTCCAATGTAATA 502008 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || | ||||| ||||||||||||||| Sbjct 502007 GTCTTACCAGTTAAGGTTTTGACAAAAATTTGCATA 501972 >seq1658 Length=21299 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || | ||| ||||| || ||||| || |||||||||||| Sbjct 18317 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 18258 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| |||||||| || || | ||||| || || || || ||| Sbjct 18257 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 18198 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 || ||||| ||||| |||||| ||||||| |||| || ||||| | || ||| || Sbjct 18197 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATC-CGATGGTTCCAC 18139 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || |||||||| |||| ||||||||| || ||||||||| Sbjct 18138 TTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCATA 18090 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| || ||||| |||||||| || || ||||| || | |||| | ||| Sbjct 17845 AACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCT 17786 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | |||||||| ||||| || |||||||||||| ||||| Sbjct 17785 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCC 17726 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| || |||| || ||||| || || || || ||||||||| Sbjct 17725 TGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTT 17666 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| ||||| |||||||||||||| Sbjct 17665 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || | ||||||||| || |||||||| ||||||||||| Sbjct 17403 CCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGAC 17344 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| | || || ||||| || || || | ||||| || || || || ||| Sbjct 17343 AAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 17284 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTAC 15128 || ||||| ||||| ||||| ||| ||| |||| ||||| || | || ||| || Sbjct 17283 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTGTC-CGATGGTTCCAC 17225 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| || | ||||| |||||||||||||| Sbjct 17224 TTCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 116 bits (128), Expect = 3e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| || || || |||||||| ||||||||||| || | ||| | ||| Sbjct 18074 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCT 18015 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || ||||| || || | ||||| ||||| || || ||| |||||||| || || Sbjct 18014 TCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCT 17955 Query 15085 CAAATTTT-GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 |||||| |||||| ||| |||| || ||||| || || || || ||||| || Sbjct 17954 TGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 17895 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| |||| ||| || || || ||||||||| Sbjct 17894 TTTACCAGTCAAAGTCTTGACGAATATTTGCATA 17861 >seq1489 Length=23360 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || | ||| ||||| || ||||| || |||||||||||| Sbjct 5106 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 5165 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| |||||||| || || | ||||| || || || || ||| Sbjct 5166 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 5225 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 || ||||| ||||| |||||| ||||||| |||| || ||||| | || ||| || Sbjct 5226 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATC-CGATGGTTCCAC 5284 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || |||||||| |||| ||||||||| || ||||||||| Sbjct 5285 TTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCATA 5333 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || ||| || | ||||||||| || || ||||| |||||||||||| Sbjct 6018 CCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAC 6077 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| | || || ||||| || ||||| | ||||| || || ||||| ||| Sbjct 6078 AAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGG 6137 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||| ||| ||| |||| ||||| || ||| || Sbjct 6138 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACT 6197 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| |||| ||||| || ||||||||||| Sbjct 6198 TCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || | ||| || || || |||||||| ||||||||||| || Sbjct 5334 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 5393 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | ||| | ||||| || ||||| || || | ||||| ||||| || || ||| Sbjct 5394 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 5453 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||||||| ||| ||| |||| || ||||| || || Sbjct 5454 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 5513 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| |||||||| |||| ||| || || |||||||||||| Sbjct 5514 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 5561 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || | ||| ||||| || |||||||| || || ||||| || Sbjct 5562 CCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTC 5621 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | ||| | ||||| || ||||| || || | ||||| || || || || ||| Sbjct 5622 AATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 5681 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| ||| |||| || |||||| || || Sbjct 5682 ATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACT 5741 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| || || |||| ||||| ||||||||||||||| Sbjct 5742 TCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCATA 5789 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || | ||| || ||||| |||||||| ||||| ||||| || ||| || | | Sbjct 5805 AAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA--GATAATGTACGGCCAT 5862 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | |||||| ||||| | ||||| || || || || ||| || ||||| || | Sbjct 5863 CTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTAT 5922 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTACGTCTAAGGTAATG 15141 | ||||| ||| ||| |||| || || || | || ||| || || || ||||| Sbjct 5923 CTTGGATTTTTGCTTTCACATTTTCAATCGTGTC-CGATGGTTCGACTTCCAATGTAATA 5981 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || | ||||| ||||||||||||||| Sbjct 5982 GTCTTACCAGTTAAGGTTTTGACAAAAATTTGCATA 6017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384569150210