Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1658 109 5e-19 seq1705 96.9 3e-15 seq1489 96.9 3e-15 >seq1658 Length=21299 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | ||||| |||||||| ||||| ||||| | | Sbjct 17860 CCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTC 17801 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | ||||| || || | ||||| || || ||||| || || Sbjct 17800 AATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 17741 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||||| |||||| || | | ||| | ||| || | ||||||| Sbjct 17740 ATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACT 17681 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||||||||||| ||||| |||||||| |||||| Sbjct 17680 TCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||||| |||||||| | ||||| ||||||||||||||||||||| Sbjct 17176 TCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGGA 17117 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| ||| |||| ||||| ||||| ||||||| || |||||||| || || Sbjct 17116 CAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTGG 17057 Query 127006 TATGCC 127011 || || Sbjct 17056 AATACC 17051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || | ||| | || || ||||||||||| |||||||| | Sbjct 17403 CCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGAC 17344 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | || ||||| || ||||||| || |||||||| || || Sbjct 17343 AAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 17284 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| |||| | ||| | ||||||| || ||| Sbjct 17283 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACT 17224 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || | ||||| |||||||| ||||| Sbjct 17223 TCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | || || |||||||| || |||||||| | | Sbjct 18089 CCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 18030 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | |||||| || || | ||||||||||||||||| || || Sbjct 18029 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 17970 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC--TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || | | ||| ||| || || | | ||||| || || | ||| | Sbjct 17969 ATTCCTTCTTTAT-CTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAA 17911 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || |||| ||| || || || || ||||| Sbjct 17910 CTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 >seq1705 Length=717327 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||||| |||||||| | ||||| || ||||||||||| |||||| Sbjct 501744 TCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCGGA 501685 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| ||| |||| ||||| ||||| ||||||| || |||||||| || || Sbjct 501684 CAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTGG 501625 Query 127006 TATGCC 127011 || || Sbjct 501624 AATACC 501619 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || ||||| | ||| | || || |||||||| || |||||||| | | Sbjct 502655 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 502596 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | |||||| || || | ||||||||||||||||| || || Sbjct 502595 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 502536 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || || | | ||||| || || | ||| || Sbjct 502535 ATTCCTTCTTTAT-CTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAAC 502477 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || |||| ||| || || ||||| ||||| Sbjct 502476 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 >seq1489 Length=23360 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||||| |||||||| | ||||| || ||||||||||| |||||| Sbjct 6245 TCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCGGA 6304 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| ||| |||| ||||| ||||| ||||||| || |||||||| || || Sbjct 6305 CAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTGG 6364 Query 127006 TATGCC 127011 || || Sbjct 6365 AATACC 6370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || ||||| | ||| | || || |||||||| || |||||||| | | Sbjct 5334 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 5393 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | |||||| || || | ||||||||||||||||| || || Sbjct 5394 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 5453 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || || | | ||||| || || | ||| || Sbjct 5454 ATTCCTTCTTTAT-CTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAAC 5512 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || |||| ||| || || ||||| ||||| Sbjct 5513 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490659945440